RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 RSL24D1Q9UHA3 163 aaKnown RBP16.02■□□□□ 0.15
CUX1-213ENST00000549414 RAPGEFL1Q9UHV5 662 aa16.02■□□□□ 0.15
CUX1-213ENST00000549414 LCHNA4D1U4 455 aa16.02■□□□□ 0.15
CUX1-213ENST00000549414 hCG_2039718K7EN88 272 aa16.02■□□□□ 0.15
CUX1-213ENST00000549414 S1PR4O95977 384 aa16.02■□□□□ 0.15
CUX1-213ENST00000549414 MYCLP1P12525 358 aaPredicted RBP16.02■□□□□ 0.15
CUX1-213ENST00000549414 TECRLQ5HYJ1 363 aa16.02■□□□□ 0.15
CUX1-213ENST00000549414 PHYKPLQ8IUZ5 450 aa16.02■□□□□ 0.15
CUX1-213ENST00000549414 AHCYL2Q96HN2 611 aaKnown RBP16.02■□□□□ 0.15
CUX1-213ENST00000549414 OR2AG1Q9H205 316 aa16.02■□□□□ 0.15
CUX1-213ENST00000549414 SMPD3Q9NY59 655 aaPredicted RBP16.02■□□□□ 0.15
CUX1-213ENST00000549414 IKZF3Q9UKT9 509 aa16.02■□□□□ 0.15
CUX1-213ENST00000549414 BHMG1C9JSJ3 638 aaPredicted RBP16.01■□□□□ 0.15
CUX1-213ENST00000549414 EI24O14681 340 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 TP73O15350 636 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 NDUFS2O75306 463 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 T-ENOLP0DO92 83 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 LBX1P52954 281 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 EPS8Q12929 822 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 CARD16Q5EG05 197 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 LRRC66Q68CR7 880 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 SLC22A17Q8WUG5 538 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 KIAA1191Q96A73 305 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 DGCR14Q96DF8 476 aaKnown RBP16.01■□□□□ 0.15
CUX1-213ENST00000549414 RIOK2Q9BVS4 552 aaKnown RBP16.01■□□□□ 0.15
CUX1-213ENST00000549414 SLC22A14Q9Y267 594 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 MAP4K5Q9Y4K4 846 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 HAS3O00219 553 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 PCCBP05166 539 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 SSR2P43308 183 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 CENPAP49450 140 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 MANFP55145 182 aaKnown RBP16.01■□□□□ 0.15
CUX1-213ENST00000549414 NFKB2Q00653 900 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 TGFBIQ15582 683 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 SVOPQ8N4V2 548 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 ACVR1CQ8NER5 493 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 OR10G6Q8NH81 332 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 TMEM175Q9BSA9 504 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 C1QTNF7Q9BXJ2 289 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 KNTC1P50748 2209 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 ABCA3Q99758 1704 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 CSF2RAP15509 400 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 AMD1P17707 334 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 NTSP30990 170 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 MAT2AP31153 395 aaKnown RBP16.01■□□□□ 0.15
CUX1-213ENST00000549414 C2orf27AQ580R0 203 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 SFT2D3Q587I9 215 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 PSAPL1Q6NUJ1 521 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 QRFPRQ96P65 431 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 MCMBPQ9BTE3 642 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 EPS8L2Q9H6S3 715 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 RAB26Q9ULW5 256 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 COMMD3-BMI1R4GMX3 469 aa16.01■□□□□ 0.15
CUX1-213ENST00000549414 ZNF840PA6NDX5 716 aa16■□□□□ 0.15
CUX1-213ENST00000549414 PAPSS2O95340 614 aaPredicted RBP16■□□□□ 0.15
CUX1-213ENST00000549414 OAS1P00973 400 aaKnown RBP16■□□□□ 0.15
CUX1-213ENST00000549414 CXCR2P25025 360 aa16■□□□□ 0.15
CUX1-213ENST00000549414 LEPRP48357 1165 aaKnown RBP16■□□□□ 0.15
CUX1-213ENST00000549414 FAM46CQ5VWP2 391 aa16■□□□□ 0.15
CUX1-213ENST00000549414 CYP2U1Q7Z449 544 aa16■□□□□ 0.15
CUX1-213ENST00000549414 CCDC103Q8IW40 242 aa16■□□□□ 0.15
CUX1-213ENST00000549414 COLGALT2Q8IYK4 626 aa16■□□□□ 0.15
CUX1-213ENST00000549414 KIAA2013Q8IYS2 634 aa16■□□□□ 0.15
CUX1-213ENST00000549414 ASB9Q96DX5 294 aa16■□□□□ 0.15
CUX1-213ENST00000549414 BTBD9Q96Q07 612 aa16■□□□□ 0.15
CUX1-213ENST00000549414 TDRD1Q9BXT4 1180 aaKnown RBP16■□□□□ 0.15
CUX1-213ENST00000549414 OAZ3Q9UMX2 235 aa16■□□□□ 0.15
CUX1-213ENST00000549414 LOC730098B7Z3J9 87 aa16■□□□□ 0.15
CUX1-213ENST00000549414 OAZ2O95190 189 aa16■□□□□ 0.15
CUX1-213ENST00000549414 HPGDP15428 266 aa16■□□□□ 0.15
CUX1-213ENST00000549414 VEGFBP49765 207 aa16■□□□□ 0.15
CUX1-213ENST00000549414 C21orf59P57076 290 aa16■□□□□ 0.15
CUX1-213ENST00000549414 DEFA1P59665 94 aa16■□□□□ 0.15
CUX1-213ENST00000549414 DEFA3P59666 94 aa16■□□□□ 0.15
CUX1-213ENST00000549414 DCTN2Q13561 401 aaKnown RBP16■□□□□ 0.15
CUX1-213ENST00000549414 RANBP10Q6VN20 620 aa16■□□□□ 0.15
CUX1-213ENST00000549414 TCAIMQ8N3R3 496 aa16■□□□□ 0.15
CUX1-213ENST00000549414 TERB1Q8NA31 727 aa16■□□□□ 0.15
CUX1-213ENST00000549414 CXorf40BQ96DE9 158 aa16■□□□□ 0.15
CUX1-213ENST00000549414 ADI1Q9BV57 179 aa16■□□□□ 0.15
CUX1-213ENST00000549414 C1orf21Q9H246 121 aa16■□□□□ 0.15
CUX1-213ENST00000549414 MKS1Q9NXB0 559 aa16■□□□□ 0.15
CUX1-213ENST00000549414 A0A0G2JN53 185 aa16■□□□□ 0.15
CUX1-213ENST00000549414 DYTNA2CJ06 578 aa16■□□□□ 0.15
CUX1-213ENST00000549414 NOBOXO60393 691 aa16■□□□□ 0.15
CUX1-213ENST00000549414 STC2O76061 302 aa16■□□□□ 0.15
CUX1-213ENST00000549414 EPOP01588 193 aa16■□□□□ 0.15
CUX1-213ENST00000549414 PRNPP04156 253 aa16■□□□□ 0.15
CUX1-213ENST00000549414 GPIP06744 558 aa16■□□□□ 0.15
CUX1-213ENST00000549414 FAM171BQ6P995 826 aa16■□□□□ 0.15
CUX1-213ENST00000549414 CYS1Q717R9 158 aa16■□□□□ 0.15
CUX1-213ENST00000549414 CLIP3Q96DZ5 547 aa16■□□□□ 0.15
CUX1-213ENST00000549414 CLDND1Q9NY35 253 aa16■□□□□ 0.15
CUX1-213ENST00000549414 CDV3Q9UKY7 258 aaKnown RBP16■□□□□ 0.15
CUX1-213ENST00000549414 LIN7AO14910 233 aaPredicted RBP16■□□□□ 0.15
CUX1-213ENST00000549414 DNTTP04053 509 aa16■□□□□ 0.15
CUX1-213ENST00000549414 G6PDP11413 515 aa16■□□□□ 0.15
CUX1-213ENST00000549414 GSK3BP49841 420 aa16■□□□□ 0.15
CUX1-213ENST00000549414 ROR2Q01974 943 aaKnown RBP16■□□□□ 0.15
CUX1-213ENST00000549414 GPM6BQ13491 265 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms