RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 HDAC8Q9BY41 377 aa5.09□□□□□ -1.6
CLIP1-217ENST00000543205 SGK2Q9HBY8 427 aa5.09□□□□□ -1.6
CLIP1-217ENST00000543205 CD93Q9NPY3 652 aa5.09□□□□□ -1.6
CLIP1-217ENST00000543205 WSB2Q9NYS7 404 aaPredicted RBP5.09□□□□□ -1.6
CLIP1-217ENST00000543205 ZC3H7BQ9UGR2 993 aaKnown RBP5.09□□□□□ -1.6
CLIP1-217ENST00000543205 MBD1Q9UIS9 605 aaPredicted RBP5.09□□□□□ -1.6
CLIP1-217ENST00000543205 DNPEPQ9ULA0 475 aa5.09□□□□□ -1.6
CLIP1-217ENST00000543205 RAB23Q9ULC3 237 aa5.09□□□□□ -1.6
CLIP1-217ENST00000543205 TTC7AQ9ULT0 858 aaPredicted RBP5.09□□□□□ -1.6
CLIP1-217ENST00000543205 FZD4Q9ULV1 537 aa5.09□□□□□ -1.6
CLIP1-217ENST00000543205 ZNF148Q9UQR1 794 aa5.09□□□□□ -1.6
CLIP1-217ENST00000543205 SAR1BQ9Y6B6 198 aa5.09□□□□□ -1.6
CLIP1-217ENST00000543205 IKBKGQ9Y6K9 419 aa5.09□□□□□ -1.6
CLIP1-217ENST00000543205 R4GN57 208 aa5.09□□□□□ -1.6
CLIP1-217ENST00000543205 NUP205Q92621 2012 aa5.09□□□□□ -1.6
CLIP1-217ENST00000543205 TRIOO75962 3097 aa5.09□□□□□ -1.6
CLIP1-217ENST00000543205 MYO18AQ92614 2054 aaKnown RBP5.08□□□□□ -1.6
CLIP1-217ENST00000543205 NYNRINQ9P2P1 1898 aaKnown RBP5.08□□□□□ -1.6
CLIP1-217ENST00000543205 TBC1D3DA0A087WVF3 549 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 TBC1D3IA0A087WXS9 549 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 TBC1D3EA0A087X179 549 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 TBC1D3KA0A087X1G2 549 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 A0A088AWK7 358 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 GOLGA6L10A0A0M3HER8 536 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 A0A1W2PQ67 120 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 TBC1D3FA6NER0 549 aaPredicted RBP5.08□□□□□ -1.6
CLIP1-217ENST00000543205 TBC1D3LB9A6J9 549 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 BOLA2-SMG1P6H3BVE0 249 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 ZNF185O15231 689 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 SOCS5O75159 536 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 SEMA4FO95754 770 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 IGLV3-19P01714 112 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 TUBB4AP04350 444 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 TBC1D3HP0C7X1 549 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 ADRB3P13945 408 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 STMN1P16949 149 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 CR2P20023 1033 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 BCKDHBP21953 392 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 NFKBIAP25963 317 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 AOAHP28039 575 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 ADSLP30566 484 aaPredicted RBP5.08□□□□□ -1.6
CLIP1-217ENST00000543205 STIP1P31948 543 aaKnown RBP5.08□□□□□ -1.6
CLIP1-217ENST00000543205 DRD3P35462 400 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 DPP6P42658 865 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 PAFAH1B1P43034 410 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 POLR2LP62875 67 aaKnown RBP5.08□□□□□ -1.6
CLIP1-217ENST00000543205 IL1RL1Q01638 556 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 NIPAL4Q0D2K0 466 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 C17orf67Q0P5P2 114 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 PRPSAP1Q14558 356 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 ANKRD20A2Q5SQ80 823 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 ARMC12Q5T9G4 340 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 ANKRD20A1Q5TYW2 823 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 ANKRD20A3Q5VUR7 823 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 TBC1D3GQ6DHY5 549 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 TBC1D3CQ6IPX1 549 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 BRAT1Q6PJG6 821 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 IL27RAQ6UWB1 636 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 ARHGEF18Q6ZSZ5 1173 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 PARS2Q7L3T8 475 aaKnown RBP5.08□□□□□ -1.6
CLIP1-217ENST00000543205 GSTA5Q7RTV2 222 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 NUP54Q7Z3B4 507 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 TBC1D3Q8IZP1 549 aaPredicted RBP5.08□□□□□ -1.6
CLIP1-217ENST00000543205 OR8H3Q8N146 312 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 ZNF567Q8N184 647 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 OXR1Q8N573 874 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 DEFB119Q8N690 84 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 OR1N1Q8NGS0 311 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 SLC35B2Q8TB61 432 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.08□□□□□ -1.6
CLIP1-217ENST00000543205 ARRDC2Q8TBH0 407 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 NKD2Q969F2 451 aaPredicted RBP5.08□□□□□ -1.6
CLIP1-217ENST00000543205 RAB7BQ96AH8 199 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 ZNF419Q96HQ0 510 aaPredicted RBP5.08□□□□□ -1.6
CLIP1-217ENST00000543205 CAPZA3Q96KX2 299 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 RBM15Q96T37 977 aaKnown RBP eCLIP5.08□□□□□ -1.6
CLIP1-217ENST00000543205 TMEM121Q9BTD3 319 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 GPR174Q9BXC1 333 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 SLC25A51Q9H1U9 297 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 OR10A4Q9H209 315 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 GLOD4Q9HC38 313 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 CPNE7Q9UBL6 633 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 DKK3Q9UBP4 350 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 SERGEFQ9UGK8 458 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 RSPH14Q9UHP6 348 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 RNF112Q9ULX5 631 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 DRG1Q9Y295 367 aaKnown RBP5.08□□□□□ -1.6
CLIP1-217ENST00000543205 RAI2Q9Y5P3 530 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 CHD5Q8TDI0 1954 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 CACNA1IQ9P0X4 2223 aa5.08□□□□□ -1.6
CLIP1-217ENST00000543205 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.07□□□□□ -1.6
CLIP1-217ENST00000543205 PRR23AA6NEV1 266 aa5.07□□□□□ -1.6
CLIP1-217ENST00000543205 C5orf60A6NFR6 353 aa5.07□□□□□ -1.6
CLIP1-217ENST00000543205 MEI4A8MW99 385 aa5.07□□□□□ -1.6
CLIP1-217ENST00000543205 KIF2AO00139 706 aaPredicted RBP5.07□□□□□ -1.6
CLIP1-217ENST00000543205 TRAFD1O14545 582 aaPredicted RBP5.07□□□□□ -1.6
CLIP1-217ENST00000543205 PLRG1O43660 514 aaKnown RBP5.07□□□□□ -1.6
CLIP1-217ENST00000543205 OPHN1O60890 802 aa5.07□□□□□ -1.6
CLIP1-217ENST00000543205 PCDH8O95206 1070 aa5.07□□□□□ -1.6
CLIP1-217ENST00000543205 GUCA1CO95843 209 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms