RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 GCAP28676 217 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 TAS2R39P59534 338 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 GBX1Q14549 363 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 KIR2DS5Q14953 304 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 BEND6Q5SZJ8 279 aaPredicted RBP16.75■□□□□ 0.27
LIG1-204ENST00000542460 MROH9Q5TGP6 573 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 CAPRIN2Q6IMN6 1127 aaKnown RBP16.75■□□□□ 0.27
LIG1-204ENST00000542460 PIM3Q86V86 326 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 NAXDQ8IW45 347 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 SLC22A15Q8IZD6 547 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 SFRP1Q8N474 314 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 ARL10Q8N8L6 244 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 GPR156Q8NFN8 814 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 GIMAP7Q8NHV1 300 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 NETO1Q8TDF5 533 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 TSPAN17Q96FV3 270 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 SLC30A3Q99726 388 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 POPDC3Q9HBV1 291 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 ARGLU1Q9NWB6 273 aaPredicted RBP16.75■□□□□ 0.27
LIG1-204ENST00000542460 NCKIPSDQ9NZQ3 722 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 SCHIP1Q9P0W5 487 aaPredicted RBP16.75■□□□□ 0.27
LIG1-204ENST00000542460 SIRPGQ9P1W8 387 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 IFRD1O00458 451 aaPredicted RBP16.75■□□□□ 0.27
LIG1-204ENST00000542460 SH3BP5O60239 455 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 NOBOXO60393 691 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 TCEA3O75764 348 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 KRT37O76014 449 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 CBSLP0DN79 551 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 STMN1P16949 149 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 ATP5DP30049 168 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 CBSP35520 551 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 RPIAP49247 311 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 CLCA4Q14CN2 919 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 PAQR3Q6TCH7 311 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 PDZD3Q86UT5 571 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 C17orf82Q86X59 251 aaPredicted RBP16.75■□□□□ 0.27
LIG1-204ENST00000542460 VRK3Q8IV63 474 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 SPDYE1Q8NFV5 336 aaPredicted RBP16.75■□□□□ 0.27
LIG1-204ENST00000542460 APOLD1Q96LR9 279 aa16.75■□□□□ 0.27
LIG1-204ENST00000542460 CABIN1Q9Y6J0 2220 aa16.74■□□□□ 0.27
LIG1-204ENST00000542460 TRBV23OR9-2A0A075B6M9 112 aa16.74■□□□□ 0.27
LIG1-204ENST00000542460 HMX2A2RU54 273 aa16.74■□□□□ 0.27
LIG1-204ENST00000542460 EIF3FO00303 357 aaPredicted RBP16.74■□□□□ 0.27
LIG1-204ENST00000542460 ENO3P13929 434 aaPredicted RBP16.74■□□□□ 0.27
LIG1-204ENST00000542460 XRCC1P18887 633 aaPredicted RBP16.74■□□□□ 0.27
LIG1-204ENST00000542460 IFFO1Q0D2I5 559 aa16.74■□□□□ 0.27
LIG1-204ENST00000542460 BMPR2Q13873 1038 aa16.74■□□□□ 0.27
LIG1-204ENST00000542460 C14orf28Q4W4Y0 310 aa16.74■□□□□ 0.27
LIG1-204ENST00000542460 ACSBG2Q5FVE4 666 aa16.74■□□□□ 0.27
LIG1-204ENST00000542460 CEP97Q8IW35 865 aa16.74■□□□□ 0.27
LIG1-204ENST00000542460 SFTPA2Q8IWL1 248 aa16.74■□□□□ 0.27
LIG1-204ENST00000542460 SLC35F3Q8IY50 421 aa16.74■□□□□ 0.27
LIG1-204ENST00000542460 AVL9Q8NBF6 648 aa16.74■□□□□ 0.27
LIG1-204ENST00000542460 KYQ8NBH2 561 aa16.74■□□□□ 0.27
LIG1-204ENST00000542460 MAPK15Q8TD08 544 aa16.74■□□□□ 0.27
LIG1-204ENST00000542460 PATE1Q8WXA2 126 aa16.74■□□□□ 0.27
LIG1-204ENST00000542460 RMDN2Q96LZ7 410 aa16.74■□□□□ 0.27
LIG1-204ENST00000542460 INSM2Q96T92 566 aaPredicted RBP16.74■□□□□ 0.27
LIG1-204ENST00000542460 CAB39LQ9H9S4 337 aa16.74■□□□□ 0.27
LIG1-204ENST00000542460 SYTL2Q9HCH5 934 aa16.74■□□□□ 0.27
LIG1-204ENST00000542460 PSMC3IPQ9P2W1 217 aaPredicted RBP16.74■□□□□ 0.27
LIG1-204ENST00000542460 TDRD6O60522 2096 aaKnown RBP16.74■□□□□ 0.27
LIG1-204ENST00000542460 OR52A4PA6NMU1 304 aa16.73■□□□□ 0.27
LIG1-204ENST00000542460 LDOC1O95751 146 aaPredicted RBP16.73■□□□□ 0.27
LIG1-204ENST00000542460 SNRPAP09012 282 aaKnown RBP16.73■□□□□ 0.27
LIG1-204ENST00000542460 ACADLP28330 430 aa16.73■□□□□ 0.27
LIG1-204ENST00000542460 RGS4P49798 205 aa16.73■□□□□ 0.27
LIG1-204ENST00000542460 IL2P60568 153 aa16.73■□□□□ 0.27
LIG1-204ENST00000542460 RAB10P61026 200 aa16.73■□□□□ 0.27
LIG1-204ENST00000542460 RASA2Q15283 850 aa16.73■□□□□ 0.27
LIG1-204ENST00000542460 NR0B2Q15466 257 aa16.73■□□□□ 0.27
LIG1-204ENST00000542460 ZKSCAN8Q15776 578 aaPredicted RBP16.73■□□□□ 0.27
LIG1-204ENST00000542460 RPE65Q16518 533 aa16.73■□□□□ 0.27
LIG1-204ENST00000542460 PROX2Q3B8N5 592 aa16.73■□□□□ 0.27
LIG1-204ENST00000542460 LRRC8EQ6NSJ5 796 aa16.73■□□□□ 0.27
LIG1-204ENST00000542460 NEK10Q6ZWH5 1172 aa16.73■□□□□ 0.27
LIG1-204ENST00000542460 SLC9B2Q86UD5 537 aa16.73■□□□□ 0.27
LIG1-204ENST00000542460 TDRPQ86YL5 185 aa16.73■□□□□ 0.27
LIG1-204ENST00000542460 CPNE9Q8IYJ1 553 aa16.73■□□□□ 0.27
LIG1-204ENST00000542460 ARL14Q8N4G2 192 aa16.73■□□□□ 0.27
LIG1-204ENST00000542460 OR2W6PQ8NHA6 318 aa16.73■□□□□ 0.27
LIG1-204ENST00000542460 SLC37A2Q8TED4 501 aa16.73■□□□□ 0.27
LIG1-204ENST00000542460 SKA2Q8WVK7 121 aaPredicted RBP16.73■□□□□ 0.27
LIG1-204ENST00000542460 TFGQ92734 400 aaPredicted RBP16.73■□□□□ 0.27
LIG1-204ENST00000542460 CXorf40BQ96DE9 158 aa16.73■□□□□ 0.27
LIG1-204ENST00000542460 C12orf66Q96MD2 445 aa16.73■□□□□ 0.27
LIG1-204ENST00000542460 ROPN1BQ9BZX4 212 aaPredicted RBP16.73■□□□□ 0.27
LIG1-204ENST00000542460 ROPN1Q9HAT0 212 aaPredicted RBP16.73■□□□□ 0.27
LIG1-204ENST00000542460 GPAMQ9HCL2 828 aa16.73■□□□□ 0.27
LIG1-204ENST00000542460 IMP3Q9NV31 184 aaKnown RBP16.73■□□□□ 0.27
LIG1-204ENST00000542460 EVA1BQ9NVM1 165 aa16.73■□□□□ 0.27
LIG1-204ENST00000542460 ZNF624Q9P2J8 865 aaPredicted RBP16.73■□□□□ 0.27
LIG1-204ENST00000542460 PADI4Q9UM07 663 aa16.73■□□□□ 0.27
LIG1-204ENST00000542460 PLAAQ9Y263 795 aa16.73■□□□□ 0.27
LIG1-204ENST00000542460 HEBP2Q9Y5Z4 205 aa16.73■□□□□ 0.27
LIG1-204ENST00000542460 IQANK1A0A1B0GTG1 560 aa16.72■□□□□ 0.27
LIG1-204ENST00000542460 CBFA2T3O75081 653 aa16.72■□□□□ 0.27
LIG1-204ENST00000542460 CRABP2P29373 138 aa16.72■□□□□ 0.27
LIG1-204ENST00000542460 SLC19A1P41440 591 aa16.72■□□□□ 0.27
LIG1-204ENST00000542460 FASLGP48023 281 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms