RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 PFKLP17858 780 aa12.65□□□□□ -0.38
SFSWAP-209ENST00000540469 FMO4P31512 558 aa12.65□□□□□ -0.38
SFSWAP-209ENST00000540469 GGT5P36269 586 aa12.65□□□□□ -0.38
SFSWAP-209ENST00000540469 PNPLA4P41247 253 aa12.65□□□□□ -0.38
SFSWAP-209ENST00000540469 RAD51Q06609 339 aa12.65□□□□□ -0.38
SFSWAP-209ENST00000540469 KCTD2Q14681 263 aa12.65□□□□□ -0.38
SFSWAP-209ENST00000540469 NKG7Q16617 165 aa12.65□□□□□ -0.38
SFSWAP-209ENST00000540469 MAPKAPK3Q16644 382 aa12.65□□□□□ -0.38
SFSWAP-209ENST00000540469 FAM214AQ32MH5 1076 aa12.65□□□□□ -0.38
SFSWAP-209ENST00000540469 ZFAND4Q86XD8 727 aa12.65□□□□□ -0.38
SFSWAP-209ENST00000540469 IQCF2Q8IXL9 164 aa12.65□□□□□ -0.38
SFSWAP-209ENST00000540469 SLC22A15Q8IZD6 547 aa12.65□□□□□ -0.38
SFSWAP-209ENST00000540469 OR56A4Q8NGH8 313 aa12.65□□□□□ -0.38
SFSWAP-209ENST00000540469 TSGA13Q96PP4 275 aa12.65□□□□□ -0.38
SFSWAP-209ENST00000540469 NPEPPSL1A6NEC2 478 aa12.65□□□□□ -0.39
SFSWAP-209ENST00000540469 TFECO14948 347 aaPredicted RBP12.65□□□□□ -0.39
SFSWAP-209ENST00000540469 CD3EAPO15446 510 aaKnown RBP12.65□□□□□ -0.39
SFSWAP-209ENST00000540469 RGS5O15539 181 aa12.65□□□□□ -0.39
SFSWAP-209ENST00000540469 SERPINA1P01009 418 aa12.65□□□□□ -0.39
SFSWAP-209ENST00000540469 SLC2A4P14672 509 aa12.65□□□□□ -0.39
SFSWAP-209ENST00000540469 SLC26A3P40879 764 aa12.65□□□□□ -0.39
SFSWAP-209ENST00000540469 LAIR2Q6ISS4 152 aa12.65□□□□□ -0.39
SFSWAP-209ENST00000540469 ZCCHC8Q6NZY4 707 aaKnown RBP12.65□□□□□ -0.39
SFSWAP-209ENST00000540469 PRR23CQ6ZRP0 262 aa12.65□□□□□ -0.39
SFSWAP-209ENST00000540469 YIPF6Q96EC8 236 aa12.65□□□□□ -0.39
SFSWAP-209ENST00000540469 ZNF419Q96HQ0 510 aaPredicted RBP12.65□□□□□ -0.39
SFSWAP-209ENST00000540469 CITED4Q96RK1 184 aa12.65□□□□□ -0.39
SFSWAP-209ENST00000540469 MYOCQ99972 504 aa12.65□□□□□ -0.39
SFSWAP-209ENST00000540469 SPATC1LQ9H0A9 340 aa12.65□□□□□ -0.39
SFSWAP-209ENST00000540469 SYTL2Q9HCH5 934 aa12.65□□□□□ -0.39
SFSWAP-209ENST00000540469 AMBNQ9NP70 447 aa12.65□□□□□ -0.39
SFSWAP-209ENST00000540469 RABL2AQ9UBK7 228 aaPredicted RBP12.65□□□□□ -0.39
SFSWAP-209ENST00000540469 PIN4Q9Y237 131 aaKnown RBP12.65□□□□□ -0.39
SFSWAP-209ENST00000540469 DERAQ9Y315 318 aa12.65□□□□□ -0.39
SFSWAP-209ENST00000540469 COL11A2P13942 1736 aaPredicted RBP12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 CDC7O00311 574 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 MAFKO60675 156 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 ECI2O75521 394 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 NDST3O95803 873 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 LGALS2P05162 132 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 MASP1P48740 699 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 RPL34P49207 117 aaKnown RBP12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 CYP4F3Q08477 520 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 PWP1Q13610 501 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 E2F2Q14209 437 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 SNAP47Q5SQN1 464 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 NEK5Q6P3R8 708 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 PAQR3Q6TCH7 311 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 DLK2Q6UY11 383 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 TMEM179BQ7Z7N9 219 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 FAM120BQ96EK7 910 aaKnown RBP12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 OSMRQ99650 979 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 TTYH2Q9BSA4 534 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 CCNB1IP1Q9NPC3 277 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 ACOT13Q9NPJ3 140 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 SLC52A3Q9NQ40 469 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 C14orf119Q9NWQ9 140 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 EHD3Q9NZN3 535 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 VAPAQ9P0L0 249 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 EIF2B4Q9UI10 523 aaKnown RBP12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 SMIM28A0A1B0GU29 152 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 EVPLLA8MZ36 301 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 HOXC11O43248 304 aaPredicted RBP12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 MTHFD2P13995 350 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 CXCR2P25025 360 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 ADRA1AP35348 466 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 DSC2Q02487 901 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 TRIM60Q495X7 471 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 AGAP6Q5VW22 663 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 NOTUMQ6P988 496 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 CYP20A1Q6UW02 462 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 PHACTR4Q8IZ21 702 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 OR2T11Q8NH01 316 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 ZNF583Q96ND8 569 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 AGAP4Q96P64 663 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 ROGDIQ9GZN7 287 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 IRF2BPLQ9H1B7 796 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 SP110Q9HB58 689 aa12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 CCDC177Q9NQR7 707 aaPredicted RBP12.64□□□□□ -0.39
SFSWAP-209ENST00000540469 ARVCFO00192 962 aa12.63□□□□□ -0.39
SFSWAP-209ENST00000540469 PRSS23O95084 383 aa12.63□□□□□ -0.39
SFSWAP-209ENST00000540469 MLYCDO95822 493 aa12.63□□□□□ -0.39
SFSWAP-209ENST00000540469 EDNRBP24530 442 aa12.63□□□□□ -0.39
SFSWAP-209ENST00000540469 RYKP34925 604 aa12.63□□□□□ -0.39
SFSWAP-209ENST00000540469 ZNF135P52742 658 aaPredicted RBP12.63□□□□□ -0.39
SFSWAP-209ENST00000540469 FCGRTP55899 365 aa12.63□□□□□ -0.39
SFSWAP-209ENST00000540469 RPL38P63173 70 aaKnown RBP12.63□□□□□ -0.39
SFSWAP-209ENST00000540469 CYP4F2P78329 520 aa12.63□□□□□ -0.39
SFSWAP-209ENST00000540469 GRIK2Q13002 908 aa12.63□□□□□ -0.39
SFSWAP-209ENST00000540469 AAK1Q2M2I8 961 aa12.63□□□□□ -0.39
SFSWAP-209ENST00000540469 SGO1Q5FBB7 561 aa12.63□□□□□ -0.39
SFSWAP-209ENST00000540469 ATAD3CQ5T2N8 411 aa12.63□□□□□ -0.39
SFSWAP-209ENST00000540469 MILR1Q7Z6M3 343 aa12.63□□□□□ -0.39
SFSWAP-209ENST00000540469 HORMAD1Q86X24 394 aa12.63□□□□□ -0.39
SFSWAP-209ENST00000540469 ZNF599Q96NL3 588 aa12.63□□□□□ -0.39
SFSWAP-209ENST00000540469 MFSD1Q9H3U5 465 aa12.63□□□□□ -0.39
SFSWAP-209ENST00000540469 NDFIP2Q9NV92 336 aa12.63□□□□□ -0.39
SFSWAP-209ENST00000540469 POLR3BQ9NW08 1133 aaPredicted RBP12.63□□□□□ -0.39
SFSWAP-209ENST00000540469 PAQR5Q9NXK6 330 aaPredicted RBP12.63□□□□□ -0.39
SFSWAP-209ENST00000540469 UXTQ9UBK9 157 aaPredicted RBP12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms