RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 RAD18Q9NS91 495 aa11.29□□□□□ -0.6
SDCBP-211ENST00000523441 DHCR7Q9UBM7 475 aaKnown RBP11.29□□□□□ -0.6
SDCBP-211ENST00000523441 SLC24A2Q9UI40 661 aa11.29□□□□□ -0.6
SDCBP-211ENST00000523441 BTRCQ9Y297 605 aa11.29□□□□□ -0.6
SDCBP-211ENST00000523441 PKDREJQ9NTG1 2253 aa11.28□□□□□ -0.6
SDCBP-211ENST00000523441 HEATR9A2RTY3 570 aa11.28□□□□□ -0.6
SDCBP-211ENST00000523441 LRRC53A6NM62 1247 aa11.28□□□□□ -0.6
SDCBP-211ENST00000523441 LGALS16A8MUM7 142 aa11.28□□□□□ -0.6
SDCBP-211ENST00000523441 PMPCBO75439 489 aa11.28□□□□□ -0.6
SDCBP-211ENST00000523441 JRKO75564 520 aa11.28□□□□□ -0.6
SDCBP-211ENST00000523441 SLC35G4P0C7Q5 338 aa11.28□□□□□ -0.6
SDCBP-211ENST00000523441 SKILP12757 684 aa11.28□□□□□ -0.6
SDCBP-211ENST00000523441 SLC25A11Q02978 314 aaKnown RBP11.28□□□□□ -0.6
SDCBP-211ENST00000523441 AP1B1Q10567 949 aa11.28□□□□□ -0.6
SDCBP-211ENST00000523441 DPYSL3Q14195 570 aa11.28□□□□□ -0.6
SDCBP-211ENST00000523441 ZNF169Q14929 603 aaPredicted RBP11.28□□□□□ -0.6
SDCBP-211ENST00000523441 VWA2Q5GFL6 755 aa11.28□□□□□ -0.6
SDCBP-211ENST00000523441 IRAK1BP1Q5VVH5 260 aa11.28□□□□□ -0.6
SDCBP-211ENST00000523441 PDPK2PQ6A1A2 396 aa11.28□□□□□ -0.6
SDCBP-211ENST00000523441 CCDC70Q6NSX1 233 aa11.28□□□□□ -0.6
SDCBP-211ENST00000523441 SHISA6Q6ZSJ9 500 aa11.28□□□□□ -0.6
SDCBP-211ENST00000523441 ZNF571Q7Z3V5 609 aaPredicted RBP11.28□□□□□ -0.6
SDCBP-211ENST00000523441 PPP1R32Q7Z5V6 425 aa11.28□□□□□ -0.6
SDCBP-211ENST00000523441 TRIM73Q86UV7 250 aa11.28□□□□□ -0.6
SDCBP-211ENST00000523441 LRRC49Q8IUZ0 686 aa11.28□□□□□ -0.6
SDCBP-211ENST00000523441 GPR135Q8IZ08 494 aa11.28□□□□□ -0.6
SDCBP-211ENST00000523441 PIP4P2Q8N4L2 257 aa11.28□□□□□ -0.6
SDCBP-211ENST00000523441 SLC25A41Q8N5S1 370 aa11.28□□□□□ -0.6
SDCBP-211ENST00000523441 KCTD6Q8NC69 237 aa11.28□□□□□ -0.6
SDCBP-211ENST00000523441 CATSPER1Q8NEC5 780 aa11.28□□□□□ -0.6
SDCBP-211ENST00000523441 ANKRD20A12PQ8NF67 263 aa11.28□□□□□ -0.6
SDCBP-211ENST00000523441 SPATA22Q8NHS9 363 aa11.28□□□□□ -0.6
SDCBP-211ENST00000523441 FERD3LQ96RJ6 166 aa11.28□□□□□ -0.6
SDCBP-211ENST00000523441 BARD1Q99728 777 aaKnown RBP11.28□□□□□ -0.6
SDCBP-211ENST00000523441 SPRTNQ9H040 489 aaPredicted RBP11.28□□□□□ -0.6
SDCBP-211ENST00000523441 NUP62CLQ9H1M0 184 aa11.28□□□□□ -0.6
SDCBP-211ENST00000523441 SRMSQ9H3Y6 488 aa11.28□□□□□ -0.6
SDCBP-211ENST00000523441 XKR8Q9H6D3 395 aa11.28□□□□□ -0.6
SDCBP-211ENST00000523441 CBX8Q9HC52 389 aa11.28□□□□□ -0.6
SDCBP-211ENST00000523441 MRPL47Q9HD33 250 aaKnown RBP11.28□□□□□ -0.6
SDCBP-211ENST00000523441 OLAHQ9NV23 265 aa11.28□□□□□ -0.6
SDCBP-211ENST00000523441 TMEM63CQ9P1W3 806 aa11.28□□□□□ -0.6
SDCBP-211ENST00000523441 ANAPC7Q9UJX3 599 aa11.28□□□□□ -0.6
SDCBP-211ENST00000523441 POMT2Q9UKY4 750 aa11.28□□□□□ -0.6
SDCBP-211ENST00000523441 SEC16AO15027 2179 aa11.27□□□□□ -0.6
SDCBP-211ENST00000523441 PCM1Q15154 2024 aa11.27□□□□□ -0.61
SDCBP-211ENST00000523441 CCDC66A2RUB6 948 aa11.27□□□□□ -0.61
SDCBP-211ENST00000523441 CNOT3O75175 753 aaKnown RBP11.27□□□□□ -0.61
SDCBP-211ENST00000523441 CTSBP07858 339 aa11.27□□□□□ -0.61
SDCBP-211ENST00000523441 MSH3P20585 1137 aa11.27□□□□□ -0.61
SDCBP-211ENST00000523441 PRDX3P30048 256 aaKnown RBP11.27□□□□□ -0.61
SDCBP-211ENST00000523441 KRTAP10-9P60411 292 aa11.27□□□□□ -0.61
SDCBP-211ENST00000523441 SLC10A2Q12908 348 aaPredicted RBP11.27□□□□□ -0.61
SDCBP-211ENST00000523441 PAFAH1B3Q15102 231 aaKnown RBP11.27□□□□□ -0.61
SDCBP-211ENST00000523441 PRKD1Q15139 912 aaPredicted RBP11.27□□□□□ -0.61
SDCBP-211ENST00000523441 GPRC6AQ5T6X5 926 aa11.27□□□□□ -0.61
SDCBP-211ENST00000523441 PPP1R2P3Q6NXS1 205 aa11.27□□□□□ -0.61
SDCBP-211ENST00000523441 CDHR3Q6ZTQ4 885 aa11.27□□□□□ -0.61
SDCBP-211ENST00000523441 MRGPRGQ86SM5 289 aa11.27□□□□□ -0.61
SDCBP-211ENST00000523441 DAAM2Q86T65 1068 aa11.27□□□□□ -0.61
SDCBP-211ENST00000523441 HOOK3Q86VS8 718 aa11.27□□□□□ -0.61
SDCBP-211ENST00000523441 LILRA3Q8N6C8 439 aaPredicted RBP11.27□□□□□ -0.61
SDCBP-211ENST00000523441 CNTD1Q8N815 330 aa11.27□□□□□ -0.61
SDCBP-211ENST00000523441 ENOX1Q8TC92 643 aaKnown RBP11.27□□□□□ -0.61
SDCBP-211ENST00000523441 BRSK1Q8TDC3 778 aa11.27□□□□□ -0.61
SDCBP-211ENST00000523441 TEKT4Q8WW24 435 aa11.27□□□□□ -0.61
SDCBP-211ENST00000523441 ITLN2Q8WWU7 325 aaPredicted RBP11.27□□□□□ -0.61
SDCBP-211ENST00000523441 LCN9Q8WX39 176 aa11.27□□□□□ -0.61
SDCBP-211ENST00000523441 RMDN2Q96LZ7 410 aa11.27□□□□□ -0.61
SDCBP-211ENST00000523441 IP6K3Q96PC2 410 aa11.27□□□□□ -0.61
SDCBP-211ENST00000523441 VPS35Q96QK1 796 aa11.27□□□□□ -0.61
SDCBP-211ENST00000523441 TRIB3Q96RU7 358 aa11.27□□□□□ -0.61
SDCBP-211ENST00000523441 SYT11Q9BT88 431 aa11.27□□□□□ -0.61
SDCBP-211ENST00000523441 ZCCHC2Q9C0B9 1178 aaKnown RBP11.27□□□□□ -0.61
SDCBP-211ENST00000523441 KIR3DX1Q9H7L2 352 aa11.27□□□□□ -0.61
SDCBP-211ENST00000523441 MAGEE1Q9HCI5 957 aa11.27□□□□□ -0.61
SDCBP-211ENST00000523441 SLC6A20Q9NP91 592 aa11.27□□□□□ -0.61
SDCBP-211ENST00000523441 C1GALT1Q9NS00 363 aa11.27□□□□□ -0.61
SDCBP-211ENST00000523441 TXLNGQ9NUQ3 528 aa11.27□□□□□ -0.61
SDCBP-211ENST00000523441 SUCOQ9UBS9 1254 aaKnown RBP11.27□□□□□ -0.61
SDCBP-211ENST00000523441 CDC23Q9UJX2 597 aa11.27□□□□□ -0.61
SDCBP-211ENST00000523441 FBXL4Q9UKA2 621 aa11.27□□□□□ -0.61
SDCBP-211ENST00000523441 HEY1Q9Y5J3 304 aa11.27□□□□□ -0.61
SDCBP-211ENST00000523441 ANKRD12Q6UB98 2062 aa11.27□□□□□ -0.61
SDCBP-211ENST00000523441 A0A1W2PQJ5 194 aa11.26□□□□□ -0.61
SDCBP-211ENST00000523441 BTN3A3O00478 584 aa11.26□□□□□ -0.61
SDCBP-211ENST00000523441 BTN3A1O00481 513 aa11.26□□□□□ -0.61
SDCBP-211ENST00000523441 DDX3XO00571 662 aaKnown RBP eCLIP11.26□□□□□ -0.61
SDCBP-211ENST00000523441 CCL21O00585 134 aa11.26□□□□□ -0.61
SDCBP-211ENST00000523441 HCRTR1O43613 425 aa11.26□□□□□ -0.61
SDCBP-211ENST00000523441 KLHL41O60662 606 aa11.26□□□□□ -0.61
SDCBP-211ENST00000523441 OR2B3O76000 313 aa11.26□□□□□ -0.61
SDCBP-211ENST00000523441 NADKO95544 446 aaPredicted RBP11.26□□□□□ -0.61
SDCBP-211ENST00000523441 F10P00742 488 aa11.26□□□□□ -0.61
SDCBP-211ENST00000523441 STSP08842 583 aa11.26□□□□□ -0.61
SDCBP-211ENST00000523441 ALAS2P22557 587 aa11.26□□□□□ -0.61
SDCBP-211ENST00000523441 PRKG2Q13237 762 aa11.26□□□□□ -0.61
SDCBP-211ENST00000523441 PIGHQ14442 188 aaPredicted RBP11.26□□□□□ -0.61
SDCBP-211ENST00000523441 PTPRCAPQ14761 206 aa11.26□□□□□ -0.61
SDCBP-211ENST00000523441 AGAP7PQ5VUJ5 663 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms