RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 FERD3LQ96RJ6 166 aa12.49□□□□□ -0.41
USP53-209ENST00000514665 TMEM209Q96SK2 561 aa12.49□□□□□ -0.41
USP53-209ENST00000514665 RSPH9Q9H1X1 276 aaPredicted RBP12.49□□□□□ -0.41
USP53-209ENST00000514665 IFT80Q9P2H3 777 aaPredicted RBP12.49□□□□□ -0.41
USP53-209ENST00000514665 A0A0U1RQF3 1178 aa12.49□□□□□ -0.41
USP53-209ENST00000514665 AZGP1P25311 298 aaKnown RBP12.49□□□□□ -0.41
USP53-209ENST00000514665 RHDQ02161 417 aa12.49□□□□□ -0.41
USP53-209ENST00000514665 PRKCZQ05513 592 aa12.49□□□□□ -0.41
USP53-209ENST00000514665 ERICH5Q6P6B1 374 aa12.49□□□□□ -0.41
USP53-209ENST00000514665 SLC2A7Q6PXP3 512 aa12.49□□□□□ -0.41
USP53-209ENST00000514665 CHSY3Q70JA7 882 aa12.49□□□□□ -0.41
USP53-209ENST00000514665 TCAIMQ8N3R3 496 aa12.49□□□□□ -0.41
USP53-209ENST00000514665 KAT2AQ92830 837 aa12.49□□□□□ -0.41
USP53-209ENST00000514665 C1QTNF7Q9BXJ2 289 aa12.49□□□□□ -0.41
USP53-209ENST00000514665 OXCT2Q9BYC2 517 aaPredicted RBP12.49□□□□□ -0.41
USP53-209ENST00000514665 TRIM8Q9BZR9 551 aa12.49□□□□□ -0.41
USP53-209ENST00000514665 SSR3Q9UNL2 185 aa12.49□□□□□ -0.41
USP53-209ENST00000514665 K7EPI3 171 aa12.49□□□□□ -0.41
USP53-209ENST00000514665 F2P00734 622 aa12.49□□□□□ -0.41
USP53-209ENST00000514665 RAP2AP10114 183 aa12.49□□□□□ -0.41
USP53-209ENST00000514665 ASMTP46597 345 aa12.49□□□□□ -0.41
USP53-209ENST00000514665 CYP4F8P98187 520 aa12.49□□□□□ -0.41
USP53-209ENST00000514665 PYDC2Q56P42 97 aa12.49□□□□□ -0.41
USP53-209ENST00000514665 COLGALT2Q8IYK4 626 aa12.49□□□□□ -0.41
USP53-209ENST00000514665 OR52L1Q8NGH7 329 aa12.49□□□□□ -0.41
USP53-209ENST00000514665 LOC110117498-PIK3R3F6TDL0 507 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 PIRO00625 290 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 SCAMP1O15126 338 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 SNAI1O95863 264 aaPredicted RBP12.48□□□□□ -0.41
USP53-209ENST00000514665 ASLP04424 464 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 PRPS2P11908 318 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 PRG2P13727 222 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 NSG1P42857 185 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 UFM1P61960 85 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 KIAA1324Q6UXG2 1013 aaKnown RBP12.48□□□□□ -0.41
USP53-209ENST00000514665 P2RY8Q86VZ1 359 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 NPAS4Q8IUM7 802 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 HID1Q8IV36 788 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 TTC29Q8NA56 475 aaPredicted RBP12.48□□□□□ -0.41
USP53-209ENST00000514665 OR10G6Q8NH81 332 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 EEF1AKMT1Q8WVE0 214 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 SUSD3Q96L08 255 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 CGREF1Q99674 301 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 OLFM1Q99784 485 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 KIFC1Q9BW19 673 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 WDR12Q9GZL7 423 aaKnown RBP12.48□□□□□ -0.41
USP53-209ENST00000514665 NCKAP1Q9Y2A7 1128 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 MYOCOSA0A1B0GUC4 107 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 A0A1B0GW55 424 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 MAGEB17A8MXT2 336 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 PDE9AO76083 593 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 PRKD3O94806 890 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 EOMESO95936 686 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 DUX4L2P0CJ85 424 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 DUX4L3P0CJ86 424 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 DUX4L4P0CJ87 422 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 DUX4L5P0CJ88 424 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 DUX4L6P0CJ89 424 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 DUX4L7P0CJ90 424 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 GSCP56915 257 aaPredicted RBP12.48□□□□□ -0.41
USP53-209ENST00000514665 COPZ1P61923 177 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 GNA13Q14344 377 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 ADGRF1Q5T601 910 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 CD99L2Q8TCZ2 262 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 OR8D1Q8WZ84 308 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 ART5Q96L15 291 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 ABCB9Q9NP78 766 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 CTPS2Q9NRF8 586 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 DEC1Q9P2X7 70 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 DUX4Q9UBX2 424 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 MYH7BA7E2Y1 1941 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 A0A088AWK7 358 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 CCNYL3P0C7X3 344 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 GJA1P17302 382 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 ZNF10P21506 573 aaPredicted RBP12.48□□□□□ -0.41
USP53-209ENST00000514665 DIO3P55073 304 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 SULT2A1Q06520 285 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 CHST9Q7L1S5 443 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 PARGQ86W56 976 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 AHI1Q8N157 1196 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 PTPN18Q99952 460 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 TRIM39Q9HCM9 518 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 ABCB8Q9NUT2 735 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 RBMX2Q9Y388 322 aaKnown RBP12.48□□□□□ -0.41
USP53-209ENST00000514665 KERAO60938 352 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 RSL1D1O76021 490 aaKnown RBP12.48□□□□□ -0.41
USP53-209ENST00000514665 POP4O95707 220 aaKnown RBP12.48□□□□□ -0.41
USP53-209ENST00000514665 IFNA16P05015 189 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 CTSEP14091 401 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 CSKP41240 450 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 DAG1Q14118 895 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 SF1Q15637 639 aaKnown RBP12.48□□□□□ -0.41
USP53-209ENST00000514665 HLA-DQA1Q5Y7H0 255 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 PDE12Q6L8Q7 609 aaKnown RBP12.48□□□□□ -0.41
USP53-209ENST00000514665 TMEM220Q6QAJ8 160 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 FAM124AQ86V42 546 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 SMYD1Q8NB12 490 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 TEX47Q8TBZ9 253 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 ING5Q8WYH8 240 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 OMA1Q96E52 524 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms