RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, human

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-222	ENST00000493919	HEXDC	Q8WVB3	486 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	NRG4	Q8WWG1	115 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	TXNDC15	Q96J42	360 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	FCRL2	Q96LA5	508 aa	Predicted RBP	11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	MENT	Q9BUN1	341 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	SPACA1	Q9HBV2	294 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	SPHK2	Q9NRA0	654 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	FGFR1OP2	Q9NVK5	253 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	CNOT8	Q9UFF9	292 aa	Known RBP	11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	SALL4	Q9UJQ4	1053 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	TMEM59L	Q9UK28	342 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	PCDHA3	Q9Y5H8	950 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	RAD54B	Q9Y620	910 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	SERTM1	A2A2V5	107 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919		A6NL46	340 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	PLK4	O00444	970 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	DHFR	P00374	187 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	IGLV3-27	P01718	113 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	TFAP2A	P05549	437 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	SMIM18	P0DKX4	95 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	CYP2A6	P11509	494 aa	Predicted RBP	11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	CDH2	P19022	906 aa	Predicted RBP	11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	MAP4	P27816	1152 aa	Known RBP	11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	PCSK6	P29122	969 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	CCR1	P32246	355 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	SLC15A1	P46059	708 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	HTR3A	P46098	478 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	SLC11A2	P49281	568 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	ATXN1	P54253	815 aa	Known RBP	11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	SLC26A5	P58743	744 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	RING1	Q06587	406 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	CLN3	Q13286	438 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	KRT81	Q14533	505 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	SLC25A52	Q3SY17	297 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	NADK2	Q4G0N4	442 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	FSCB	Q5H9T9	825 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	ATAD3B	Q5T9A4	648 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	RHBDF2	Q6PJF5	856 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	CYP20A1	Q6UW02	462 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	ZNF227	Q86WZ6	799 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	TMEM25	Q86YD3	366 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	CDKL3	Q8IVW4	592 aa	Predicted RBP	11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	FAM26E	Q8N5C1	309 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	RXFP2	Q8WXD0	754 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	FAM3C	Q92520	227 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	NPY6R	Q99463	290 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	C12orf57	Q99622	126 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	BBS2	Q9BXC9	721 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	ADAM33	Q9BZ11	813 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	C11orf16	Q9NQ32	467 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	PIGV	Q9NUD9	493 aa		11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	TRMT6	Q9UJA5	497 aa	Known RBP	11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	TSR3	Q9UJK0	312 aa	Known RBP	11.43	□□□□□ -0.58
BRCA1-222	ENST00000493919	ZDBF2	Q9HCK1	2354 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	F5	P12259	2224 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	MYOF	Q9NZM1	2061 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	SSU72P8	A0A1W2PR75	194 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	C2CD4B	A6NLJ0	364 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	FPGT	O14772	594 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	TSPAN3	O60637	253 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	RNASEH1	O60930	286 aa	Known RBP	11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	WDPCP	O95876	746 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	QDPR	P09417	244 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	SRC	P12931	536 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	EDN3	P14138	238 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	RAB4A	P20338	218 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	GPD1	P21695	349 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	KEL	P23276	732 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	CAPZA2	P47755	286 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	FNTB	P49356	437 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	SPCS3	P61009	180 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	RPL7A	P62424	266 aa	Known RBP	11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	DSC2	Q02487	901 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	ATP1A4	Q13733	1029 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	SELPLG	Q14242	412 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	SLC18A3	Q16572	532 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	TMEM31	Q5JXX7	168 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	C3orf33	Q6P1S2	294 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	RFWD3	Q6PCD5	774 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	MICU2	Q8IYU8	434 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	SYCE1	Q8N0S2	351 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	NAT16	Q8N8M0	369 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	FBXO15	Q8NCQ5	510 aa	Predicted RBP	11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	ADCY4	Q8NFM4	1077 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	CLHC1	Q8NHS4	586 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	YIPF5	Q969M3	257 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	VCPIP1	Q96JH7	1222 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	TEKT5	Q96M29	485 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	C1QTNF1	Q9BXJ1	281 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	QRSL1	Q9H0R6	528 aa	Known RBP	11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	THAP2	Q9H0W7	228 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	ISCU	Q9H1K1	167 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	LTB4R2	Q9NPC1	389 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	SEPT3	Q9UH03	358 aa		11.42	□□□□□ -0.58
BRCA1-222	ENST00000493919	MIA3	Q5JRA6	1907 aa		11.41	□□□□□ -0.58
BRCA1-222	ENST00000493919	LINC00587	B1AMM8	73 aa		11.41	□□□□□ -0.58
BRCA1-222	ENST00000493919	PGRMC1	O00264	195 aa	Known RBP	11.41	□□□□□ -0.58
BRCA1-222	ENST00000493919	MAN2B1	O00754	1011 aa		11.41	□□□□□ -0.58
BRCA1-222	ENST00000493919	PPM1D	O15297	605 aa		11.41	□□□□□ -0.58

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