RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 ENO3P13929 434 aaPredicted RBP11.95□□□□□ -0.5
HDAC6-230ENST00000488543 TSPAN8P19075 237 aa11.95□□□□□ -0.5
HDAC6-230ENST00000488543 TNFRSF4P43489 277 aa11.95□□□□□ -0.5
HDAC6-230ENST00000488543 PSMD8P48556 350 aa11.95□□□□□ -0.5
HDAC6-230ENST00000488543 DCDC1P59894 354 aa11.95□□□□□ -0.5
HDAC6-230ENST00000488543 TMEM196Q5HYL7 178 aa11.95□□□□□ -0.5
HDAC6-230ENST00000488543 GPRC6AQ5T6X5 926 aa11.95□□□□□ -0.5
HDAC6-230ENST00000488543 FBXO39Q8N4B4 442 aa11.95□□□□□ -0.5
HDAC6-230ENST00000488543 IL17RCQ8NAC3 791 aa11.95□□□□□ -0.5
HDAC6-230ENST00000488543 NSUN5Q96P11 429 aaKnown RBP11.95□□□□□ -0.5
HDAC6-230ENST00000488543 KLHL4Q9C0H6 718 aa11.95□□□□□ -0.5
HDAC6-230ENST00000488543 MBD1Q9UIS9 605 aaPredicted RBP11.95□□□□□ -0.5
HDAC6-230ENST00000488543 SDHDO14521 159 aa11.95□□□□□ -0.5
HDAC6-230ENST00000488543 ADAM23O75077 832 aa11.95□□□□□ -0.5
HDAC6-230ENST00000488543 RPS17P08708 135 aaKnown RBP11.95□□□□□ -0.5
HDAC6-230ENST00000488543 GFAPP14136 432 aa11.95□□□□□ -0.5
HDAC6-230ENST00000488543 XPAP23025 273 aaPredicted RBP11.95□□□□□ -0.5
HDAC6-230ENST00000488543 CDH13P55290 713 aa11.95□□□□□ -0.5
HDAC6-230ENST00000488543 BTKQ06187 659 aa11.95□□□□□ -0.5
HDAC6-230ENST00000488543 ENPP2Q13822 863 aa11.95□□□□□ -0.5
HDAC6-230ENST00000488543 CNPY1Q3B7I2 92 aa11.95□□□□□ -0.5
HDAC6-230ENST00000488543 CWF19L1Q69YN2 538 aaKnown RBP11.95□□□□□ -0.5
HDAC6-230ENST00000488543 Q6ZVL8 140 aa11.95□□□□□ -0.5
HDAC6-230ENST00000488543 TECPR1Q7Z6L1 1165 aa11.95□□□□□ -0.5
HDAC6-230ENST00000488543 RALGPS2Q86X27 583 aaPredicted RBP11.95□□□□□ -0.5
HDAC6-230ENST00000488543 TMIEQ8NEW7 156 aa11.95□□□□□ -0.5
HDAC6-230ENST00000488543 SCAMP4Q969E2 229 aa11.95□□□□□ -0.5
HDAC6-230ENST00000488543 ULK4Q96C45 1275 aa11.95□□□□□ -0.5
HDAC6-230ENST00000488543 MAELQ96JY0 434 aaKnown RBP11.95□□□□□ -0.5
HDAC6-230ENST00000488543 CDRT15Q96T59 188 aa11.95□□□□□ -0.5
HDAC6-230ENST00000488543 COPS8Q99627 209 aa11.95□□□□□ -0.5
HDAC6-230ENST00000488543 CCDC28BQ9BUN5 200 aa11.95□□□□□ -0.5
HDAC6-230ENST00000488543 WRAP53Q9BUR4 548 aaKnown RBP11.95□□□□□ -0.5
HDAC6-230ENST00000488543 TRIM4Q9C037 500 aa11.95□□□□□ -0.5
HDAC6-230ENST00000488543 MKRN2Q9H000 416 aaKnown RBP11.95□□□□□ -0.5
HDAC6-230ENST00000488543 ZNF385DQ9H6B1 395 aa11.95□□□□□ -0.5
HDAC6-230ENST00000488543 EML4Q9HC35 981 aaKnown RBP11.95□□□□□ -0.5
HDAC6-230ENST00000488543 TRPV5Q9NQA5 729 aa11.95□□□□□ -0.5
HDAC6-230ENST00000488543 LATS2Q9NRM7 1088 aa11.95□□□□□ -0.5
HDAC6-230ENST00000488543 SMOXQ9NWM0 555 aa11.95□□□□□ -0.5
HDAC6-230ENST00000488543 SYCE1LA8MT33 242 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 PPP6CO00743 305 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 STX16O14662 325 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 CDK14O94921 469 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 TRIM16O95361 564 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 EEF1DP29692 281 aaKnown RBP11.94□□□□□ -0.5
HDAC6-230ENST00000488543 ETV3P41162 512 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 NSG1P42857 185 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 SLC44A4Q53GD3 710 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 METTL21CQ5VZV1 264 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 PAOXQ6QHF9 649 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 SBSNQ6UWP8 590 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 RAB44Q7Z6P3 723 aaPredicted RBP11.94□□□□□ -0.5
HDAC6-230ENST00000488543 GPSM1Q86YR5 675 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 ZBTB2Q8N680 514 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 NR1H4Q96RI1 486 aaPredicted RBP11.94□□□□□ -0.5
HDAC6-230ENST00000488543 NPAS2Q99743 824 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 C1QTNF3Q9BXJ4 246 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 FAM83DQ9H4H8 585 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 SUN2Q9UH99 717 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 STK25O00506 426 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 MID1O15344 667 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 KLF8O95600 359 aaPredicted RBP11.94□□□□□ -0.5
HDAC6-230ENST00000488543 VCLP18206 1134 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 GSTT1P30711 240 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 AGTR2P50052 363 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 MTTPP55157 894 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 SH3BP2P78314 561 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 MS4A2Q01362 244 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 SATB1Q01826 763 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 TDGQ13569 410 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 MMEL1Q495T6 779 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 FBXO48Q5FWF7 155 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 HENMT1Q5T8I9 393 aaKnown RBP11.94□□□□□ -0.5
HDAC6-230ENST00000488543 LIPIQ6XZB0 460 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 SATL1Q86VE3 508 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 DSELQ8IZU8 1212 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 SPATA16Q9BXB7 569 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 SERGEFQ9UGK8 458 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 TSR3Q9UJK0 312 aaKnown RBP11.94□□□□□ -0.5
HDAC6-230ENST00000488543 NDRG2Q9UN36 371 aaKnown RBP11.94□□□□□ -0.5
HDAC6-230ENST00000488543 CDYLQ9Y232 598 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 COQ6Q9Y2Z9 468 aa11.94□□□□□ -0.5
HDAC6-230ENST00000488543 FADS2P1A8MWK0 482 aa11.93□□□□□ -0.5
HDAC6-230ENST00000488543 UQCRBP14927 111 aa11.93□□□□□ -0.5
HDAC6-230ENST00000488543 COL9A1P20849 921 aa11.93□□□□□ -0.5
HDAC6-230ENST00000488543 ITGB7P26010 798 aa11.93□□□□□ -0.5
HDAC6-230ENST00000488543 GRSF1Q12849 480 aaKnown RBP eCLIP11.93□□□□□ -0.5
HDAC6-230ENST00000488543 CNTN1Q12860 1018 aa11.93□□□□□ -0.5
HDAC6-230ENST00000488543 TLR1Q15399 786 aa11.93□□□□□ -0.5
HDAC6-230ENST00000488543 GSTA3Q16772 222 aa11.93□□□□□ -0.5
HDAC6-230ENST00000488543 PPP1R3AQ16821 1122 aa11.93□□□□□ -0.5
HDAC6-230ENST00000488543 UGT3A2Q3SY77 523 aa11.93□□□□□ -0.5
HDAC6-230ENST00000488543 GPR153Q6NV75 609 aa11.93□□□□□ -0.5
HDAC6-230ENST00000488543 AAGABQ6PD74 315 aa11.93□□□□□ -0.5
HDAC6-230ENST00000488543 CYHR1Q6ZMK1 362 aa11.93□□□□□ -0.5
HDAC6-230ENST00000488543 GALNT15Q8N3T1 639 aa11.93□□□□□ -0.5
HDAC6-230ENST00000488543 FAM3CQ92520 227 aa11.93□□□□□ -0.5
HDAC6-230ENST00000488543 FAR2Q96K12 515 aa11.93□□□□□ -0.5
HDAC6-230ENST00000488543 RIOK2Q9BVS4 552 aaKnown RBP11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms