RNA–Protein interactions for RNA: ENST00000486941.1

SNRNP40-205, Transcript of small nuclear ribonucleoprotein U5 subunit 40, human

TSL 2

Gene SNRNP40, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRNP40-205	ENST00000486941	ACOX2	Q99424	681 aa		4.11	□□□□□ -1.75
SNRNP40-205	ENST00000486941	MED10	Q9BTT4	135 aa		4.11	□□□□□ -1.75
SNRNP40-205	ENST00000486941	SELENOO	Q9BVL4	669 aa		4.11	□□□□□ -1.75
SNRNP40-205	ENST00000486941	BBS2	Q9BXC9	721 aa		4.11	□□□□□ -1.75
SNRNP40-205	ENST00000486941	NACA2	Q9H009	215 aa		4.11	□□□□□ -1.75
SNRNP40-205	ENST00000486941	ZDHHC4	Q9NPG8	344 aa		4.11	□□□□□ -1.75
SNRNP40-205	ENST00000486941	ITM2C	Q9NQX7	267 aa		4.11	□□□□□ -1.75
SNRNP40-205	ENST00000486941	TLR8	Q9NR97	1041 aa	Known RBP	4.11	□□□□□ -1.75
SNRNP40-205	ENST00000486941	DNAJC17	Q9NVM6	304 aa	Known RBP	4.11	□□□□□ -1.75
SNRNP40-205	ENST00000486941	TMEM45A	Q9NWC5	275 aa		4.11	□□□□□ -1.75
SNRNP40-205	ENST00000486941	NKX1-2	Q9UD57	310 aa	Predicted RBP	4.11	□□□□□ -1.75
SNRNP40-205	ENST00000486941	MID2	Q9UJV3	735 aa		4.11	□□□□□ -1.75
SNRNP40-205	ENST00000486941	LSM7	Q9UK45	103 aa	Known RBP	4.11	□□□□□ -1.75
SNRNP40-205	ENST00000486941	SCML2	Q9UQR0	700 aa		4.11	□□□□□ -1.75
SNRNP40-205	ENST00000486941	ATXN2	Q99700	1313 aa	Known RBP	4.11	□□□□□ -1.75
SNRNP40-205	ENST00000486941	ASPM	Q8IZT6	3477 aa		4.11	□□□□□ -1.75
SNRNP40-205	ENST00000486941	HELZ2	Q9BYK8	2649 aa	Known RBP	4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	ITPR1	Q14643	2758 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	NBEA	Q8NFP9	2946 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	TMEM131	Q92545	1883 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	PRSS44	E7EML9	344 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	NEDD8-MDP1	E9PL57	170 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	SPTLC2	O15270	562 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	TIMM44	O43615	452 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	SH3BP5	O60239	455 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	CBFA2T3	O75081	653 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	RASSF9	O75901	435 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	BEST1	O76090	585 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	NDUFB8	O95169	186 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	TBX18	O95935	607 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	ZNF883	P0CG24	379 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	IRF1	P10914	325 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	P4HA1	P13674	534 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	TRIM21	P19474	475 aa	Known RBP	4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	TNFRSF8	P28908	595 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	OXTR	P30559	389 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	ARRB2	P32121	409 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	CHKA	P35790	457 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	CASP4	P49662	377 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	PGF	P49763	221 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	MAP3K7CL	P57077	242 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	ASIC1	P78348	528 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	BIRC3	Q13489	604 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	DNASE1L3	Q13609	305 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	ENPP2	Q13822	863 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	STARD3	Q14849	445 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	KNOP1	Q1ED39	458 aa	Known RBP	4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	ZNF699	Q32M78	642 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	ZACN	Q401N2	412 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	NUGGC	Q68CJ6	796 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	DENND2C	Q68D51	928 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	PLAG1	Q6DJT9	500 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	CCNI2	Q6ZMN8	369 aa	Predicted RBP	4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941		Q6ZTC4	211 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	TPGS1	Q6ZTW0	290 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	TOGARAM2	Q6ZUX3	1019 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	TADA2B	Q86TJ2	420 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	ACOT1	Q86TX2	421 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	NAXD	Q8IW45	347 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	NELFCD	Q8IXH7	590 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	CADM4	Q8NFZ8	388 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	GOLGA5	Q8TBA6	731 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	SLC2A14	Q8TDB8	520 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	UCMA	Q8WVF2	138 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	P2RY11	Q96G91	374 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	HNRNPAB	Q99729	332 aa	Known RBP	4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	NUAK2	Q9H093	628 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	CDH19	Q9H159	772 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	SDCBP2	Q9H190	292 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	SMYD3	Q9H7B4	428 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	MAGEF1	Q9HAY2	307 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	PRDM16	Q9HAZ2	1276 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	PNPLA8	Q9NP80	782 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	FSCN3	Q9NQT6	498 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	MTPAP	Q9NVV4	582 aa	Known RBP eCLIP	4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	DMAC2	Q9NW81	257 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	OSER1	Q9NX31	292 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	WSB2	Q9NYS7	404 aa	Predicted RBP	4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	THAP10	Q9P2Z0	257 aa	Predicted RBP	4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	MTMR6	Q9Y217	621 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	ZNF510	Q9Y2H8	683 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	STON1	Q9Y6Q2	735 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	SPEG	Q15772	3267 aa		4.1	□□□□□ -1.75
SNRNP40-205	ENST00000486941	FLNB	O75369	2602 aa	Known RBP	4.09	□□□□□ -1.75
SNRNP40-205	ENST00000486941	MYLK	Q15746	1914 aa		4.09	□□□□□ -1.75
SNRNP40-205	ENST00000486941	TP53BP1	Q12888	1972 aa	Predicted RBP	4.09	□□□□□ -1.75
SNRNP40-205	ENST00000486941	PTPRQ	Q9UMZ3	2332 aa		4.09	□□□□□ -1.75
SNRNP40-205	ENST00000486941	TRBV5-3	A0A0A0MS03	114 aa		4.09	□□□□□ -1.75
SNRNP40-205	ENST00000486941	TMEM272	A0A1B0GTI8	110 aa		4.09	□□□□□ -1.75
SNRNP40-205	ENST00000486941	CAPN8	A6NHC0	703 aa		4.09	□□□□□ -1.75
SNRNP40-205	ENST00000486941	LRRIQ3	A6PVS8	624 aa	Predicted RBP	4.09	□□□□□ -1.75
SNRNP40-205	ENST00000486941	MEI4	A8MW99	385 aa		4.09	□□□□□ -1.75
SNRNP40-205	ENST00000486941	WASH3P	C4AMC7	463 aa		4.09	□□□□□ -1.75
SNRNP40-205	ENST00000486941	HHLA1	C9JL84	531 aa		4.09	□□□□□ -1.75
SNRNP40-205	ENST00000486941	PDXK	O00764	312 aa		4.09	□□□□□ -1.75
SNRNP40-205	ENST00000486941	BCAT2	O15382	392 aa	Predicted RBP	4.09	□□□□□ -1.75
SNRNP40-205	ENST00000486941	POLR2D	O15514	142 aa	Known RBP	4.09	□□□□□ -1.75
SNRNP40-205	ENST00000486941	STX6	O43752	255 aa		4.09	□□□□□ -1.75
SNRNP40-205	ENST00000486941	SYNCRIP	O60506	623 aa	Known RBP	4.09	□□□□□ -1.75
SNRNP40-205	ENST00000486941	YEATS4	O95619	227 aa		4.09	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms