RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 ZMYND15Q9H091 742 aa8.1□□□□□ -1.11
SF3A1-208ENST00000485618 TRIT1Q9H3H1 467 aaKnown RBP8.1□□□□□ -1.11
SF3A1-208ENST00000485618 COG4Q9H9E3 785 aa8.1□□□□□ -1.11
SF3A1-208ENST00000485618 PRDM8Q9NQV8 689 aa8.1□□□□□ -1.11
SF3A1-208ENST00000485618 ASH1LQ9NR48 2969 aaKnown RBP8.1□□□□□ -1.11
SF3A1-208ENST00000485618 MARCH4Q9P2E8 410 aaPredicted RBP8.1□□□□□ -1.11
SF3A1-208ENST00000485618 SLC23A2Q9UGH3 650 aa8.1□□□□□ -1.11
SF3A1-208ENST00000485618 PNMA8BQ9ULN7 279 aaPredicted RBP8.1□□□□□ -1.11
SF3A1-208ENST00000485618 NFU1Q9UMS0 254 aa8.1□□□□□ -1.11
SF3A1-208ENST00000485618 VWA7Q9Y334 891 aa8.1□□□□□ -1.11
SF3A1-208ENST00000485618 KNTC1P50748 2209 aa8.1□□□□□ -1.11
SF3A1-208ENST00000485618 ARID1BQ8NFD5 2236 aaPredicted RBP8.09□□□□□ -1.11
SF3A1-208ENST00000485618 A0A087WUV0 522 aaPredicted RBP8.09□□□□□ -1.11
SF3A1-208ENST00000485618 TCRBV9S1A1TA0A576 114 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 FAM221BA6H8Z2 402 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 TAF4O00268 1085 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 DUX1O43812 170 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 NOBOXO60393 691 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 TCEA3O75764 348 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 SLCO2B1O94956 709 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 CELA2BP08218 269 aaPredicted RBP8.09□□□□□ -1.11
SF3A1-208ENST00000485618 PRSS56P0CW18 603 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 GIMD1P0DJR0 217 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 MTHFD1P11586 935 aaKnown RBP8.09□□□□□ -1.11
SF3A1-208ENST00000485618 AMD1P17707 334 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 CD9P21926 228 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 MAP4P27816 1152 aaKnown RBP8.09□□□□□ -1.11
SF3A1-208ENST00000485618 AOAHP28039 575 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 TNFRSF8P28908 595 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 ATP5DP30049 168 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 SSTR1P30872 391 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 SPRP35270 261 aaPredicted RBP8.09□□□□□ -1.11
SF3A1-208ENST00000485618 GP5P40197 560 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 CCNFP41002 786 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 PMS2P54278 862 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 EPHA4P54764 986 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 CSE1LP55060 971 aaKnown RBP8.09□□□□□ -1.11
SF3A1-208ENST00000485618 PRKAA1Q13131 559 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 NFE2L1Q14494 772 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 SEMA3AQ14563 771 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 SEPT7Q16181 437 aaKnown RBP8.09□□□□□ -1.11
SF3A1-208ENST00000485618 RPE65Q16518 533 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 KLHL38Q2WGJ6 581 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 GRTP1Q5TC63 336 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 FAM45BPQ6NSW5 357 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 NEK10Q6ZWH5 1172 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 CCDC91Q7Z6B0 441 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 STRA8Q7Z7C7 330 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 C11orf96Q7Z7L8 435 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 LDB1Q86U70 411 aaPredicted RBP8.09□□□□□ -1.11
SF3A1-208ENST00000485618 PDZD3Q86UT5 571 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 TMPRSS12Q86WS5 348 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 C17orf82Q86X59 251 aaPredicted RBP8.09□□□□□ -1.11
SF3A1-208ENST00000485618 DENND6AQ8IWF6 608 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 AGGF1Q8N302 714 aaeCLIP8.09□□□□□ -1.11
SF3A1-208ENST00000485618 ZBTB2Q8N680 514 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 BAHD1Q8TBE0 780 aaPredicted RBP8.09□□□□□ -1.11
SF3A1-208ENST00000485618 FAM45AQ8TCE6 357 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 ADAMTS14Q8WXS8 1223 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 TFGQ92734 400 aaPredicted RBP8.09□□□□□ -1.11
SF3A1-208ENST00000485618 FERD3LQ96RJ6 166 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 TRIM54Q9BYV2 358 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 STRADBQ9C0K7 418 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 WWP1Q9H0M0 922 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 P2RY12Q9H244 342 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 CCDC86Q9H6F5 360 aaKnown RBP8.09□□□□□ -1.11
SF3A1-208ENST00000485618 PPCSQ9HAB8 311 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 SYTL2Q9HCH5 934 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 LRRC4CQ9HCJ2 640 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 FBXO6Q9NRD1 293 aaPredicted RBP8.09□□□□□ -1.11
SF3A1-208ENST00000485618 LATS2Q9NRM7 1088 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 IMP3Q9NV31 184 aaKnown RBP8.09□□□□□ -1.11
SF3A1-208ENST00000485618 KCNK4Q9NYG8 393 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 FAM8A1Q9UBU6 413 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 TRMT6Q9UJA5 497 aaKnown RBP8.09□□□□□ -1.11
SF3A1-208ENST00000485618 ASF1AQ9Y294 204 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 PLEKHM1Q9Y4G2 1056 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 WDFY3Q8IZQ1 3526 aa8.09□□□□□ -1.11
SF3A1-208ENST00000485618 FLNBO75369 2602 aaKnown RBP8.09□□□□□ -1.11
SF3A1-208ENST00000485618 TMEM131Q92545 1883 aa8.09□□□□□ -1.12
SF3A1-208ENST00000485618 ZNF106Q9H2Y7 1883 aaKnown RBP8.09□□□□□ -1.12
SF3A1-208ENST00000485618 SCN8AQ9UQD0 1980 aa8.08□□□□□ -1.12
SF3A1-208ENST00000485618 MAST4O15021 2626 aa8.08□□□□□ -1.12
SF3A1-208ENST00000485618 ARHGEF17Q96PE2 2063 aaPredicted RBP8.08□□□□□ -1.12
SF3A1-208ENST00000485618 TRBV23OR9-2A0A075B6M9 112 aa8.08□□□□□ -1.12
SF3A1-208ENST00000485618 ZNF839A8K0R7 811 aa8.08□□□□□ -1.12
SF3A1-208ENST00000485618 BHMG1C9JSJ3 638 aaPredicted RBP8.08□□□□□ -1.12
SF3A1-208ENST00000485618 MATN2O00339 956 aa8.08□□□□□ -1.12
SF3A1-208ENST00000485618 SGTAO43765 313 aa8.08□□□□□ -1.12
SF3A1-208ENST00000485618 ZBTB14O43829 449 aa8.08□□□□□ -1.12
SF3A1-208ENST00000485618 GPC4O75487 556 aa8.08□□□□□ -1.12
SF3A1-208ENST00000485618 BANF1O75531 89 aa8.08□□□□□ -1.12
SF3A1-208ENST00000485618 HAUS5O94927 633 aa8.08□□□□□ -1.12
SF3A1-208ENST00000485618 AHSGP02765 367 aa8.08□□□□□ -1.12
SF3A1-208ENST00000485618 INHBAP08476 426 aa8.08□□□□□ -1.12
SF3A1-208ENST00000485618 HIST1H2AGP0C0S8 130 aaPredicted RBP8.08□□□□□ -1.12
SF3A1-208ENST00000485618 JUPP14923 745 aa8.08□□□□□ -1.12
SF3A1-208ENST00000485618 ITGB6P18564 788 aa8.08□□□□□ -1.12
SF3A1-208ENST00000485618 HIST1H2ADP20671 130 aa8.08□□□□□ -1.12
SF3A1-208ENST00000485618 CNTFP26441 200 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms