RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 TNRC6AQ8NDV7 1962 aaKnown RBP21.01■□□□□ 0.95
USP40-215ENST00000484528 CFAP99D6REC4 459 aa21■□□□□ 0.95
USP40-215ENST00000484528 METTL18O95568 372 aa21■□□□□ 0.95
USP40-215ENST00000484528 FTCDO95954 541 aa21■□□□□ 0.95
USP40-215ENST00000484528 MT-ND3P03897 115 aa21■□□□□ 0.95
USP40-215ENST00000484528 ATP1B2P14415 290 aaPredicted RBP21■□□□□ 0.95
USP40-215ENST00000484528 HADHAP40939 763 aa21■□□□□ 0.95
USP40-215ENST00000484528 KPNA2P52292 529 aaKnown RBP21■□□□□ 0.95
USP40-215ENST00000484528 HSD11B2P80365 405 aa21■□□□□ 0.95
USP40-215ENST00000484528 ZRANB3Q5FWF4 1079 aa21■□□□□ 0.95
USP40-215ENST00000484528 CAPRIN2Q6IMN6 1127 aaKnown RBP21■□□□□ 0.95
USP40-215ENST00000484528 PEX26Q7Z412 305 aa21■□□□□ 0.95
USP40-215ENST00000484528 KMT5CQ86Y97 462 aa21■□□□□ 0.95
USP40-215ENST00000484528 OR4E2Q8NGC2 313 aa21■□□□□ 0.95
USP40-215ENST00000484528 DESI2Q9BSY9 194 aa21■□□□□ 0.95
USP40-215ENST00000484528 TWSG1Q9GZX9 223 aa21■□□□□ 0.95
USP40-215ENST00000484528 ARNT2Q9HBZ2 717 aa21■□□□□ 0.95
USP40-215ENST00000484528 AMFRQ9UKV5 643 aa21■□□□□ 0.95
USP40-215ENST00000484528 R3HDM2Q9Y2K5 976 aaKnown RBP21■□□□□ 0.95
USP40-215ENST00000484528 MED13Q9UHV7 2174 aa21■□□□□ 0.95
USP40-215ENST00000484528 SEC16AO15027 2179 aa20.99■□□□□ 0.95
USP40-215ENST00000484528 PIPSLA2A3N6 862 aa20.99■□□□□ 0.95
USP40-215ENST00000484528 CCDC78A2IDD5 438 aa20.99■□□□□ 0.95
USP40-215ENST00000484528 KLHL33A6NCF5 533 aa20.99■□□□□ 0.95
USP40-215ENST00000484528 GOLGA6L9A6NEM1 432 aa20.99■□□□□ 0.95
USP40-215ENST00000484528 GDF10P55107 478 aa20.99■□□□□ 0.95
USP40-215ENST00000484528 RPS18P62269 152 aaKnown RBP20.99■□□□□ 0.95
USP40-215ENST00000484528 KCTD11Q693B1 232 aa20.99■□□□□ 0.95
USP40-215ENST00000484528 TAS2R42Q7RTR8 314 aa20.99■□□□□ 0.95
USP40-215ENST00000484528 SERPINA9Q86WD7 417 aa20.99■□□□□ 0.95
USP40-215ENST00000484528 D2HGDHQ8N465 521 aa20.99■□□□□ 0.95
USP40-215ENST00000484528 LRRC45Q96CN5 670 aa20.99■□□□□ 0.95
USP40-215ENST00000484528 PPP1R2P1Q96PQ5 205 aa20.99■□□□□ 0.95
USP40-215ENST00000484528 TLR10Q9BXR5 811 aa20.99■□□□□ 0.95
USP40-215ENST00000484528 ACTL8Q9H568 366 aa20.99■□□□□ 0.95
USP40-215ENST00000484528 COG4Q9H9E3 785 aa20.99■□□□□ 0.95
USP40-215ENST00000484528 ZDHHC3Q9NYG2 299 aa20.99■□□□□ 0.95
USP40-215ENST00000484528 POLHQ9Y253 713 aa20.99■□□□□ 0.95
USP40-215ENST00000484528 TP53TG5Q9Y2B4 290 aa20.99■□□□□ 0.95
USP40-215ENST00000484528 COLEC10Q9Y6Z7 277 aa20.99■□□□□ 0.95
USP40-215ENST00000484528 SNRNP200O75643 2136 aaKnown RBP20.99■□□□□ 0.95
USP40-215ENST00000484528 LRRK2Q5S007 2527 aa20.99■□□□□ 0.95
USP40-215ENST00000484528 TCRBV7S2A1N4TA0A589 114 aa20.98■□□□□ 0.95
USP40-215ENST00000484528 K7EM74 188 aa20.98■□□□□ 0.95
USP40-215ENST00000484528 CREG1O75629 220 aa20.98■□□□□ 0.95
USP40-215ENST00000484528 ZBTB11O95625 1053 aaPredicted RBP20.98■□□□□ 0.95
USP40-215ENST00000484528 NDUFS1P28331 727 aa20.98■□□□□ 0.95
USP40-215ENST00000484528 POU6F1Q14863 301 aa20.98■□□□□ 0.95
USP40-215ENST00000484528 PARP6Q2NL67 630 aa20.98■□□□□ 0.95
USP40-215ENST00000484528 LACTB2Q53H82 288 aaPredicted RBP20.98■□□□□ 0.95
USP40-215ENST00000484528 TMEM126BQ8IUX1 230 aa20.98■□□□□ 0.95
USP40-215ENST00000484528 KLHDC8BQ8IXV7 354 aa20.98■□□□□ 0.95
USP40-215ENST00000484528 CLDN19Q8N6F1 224 aa20.98■□□□□ 0.95
USP40-215ENST00000484528 ZFPM2Q8WW38 1151 aa20.98■□□□□ 0.95
USP40-215ENST00000484528 FERD3LQ96RJ6 166 aa20.98■□□□□ 0.95
USP40-215ENST00000484528 BAG1Q99933 345 aaPredicted RBP20.98■□□□□ 0.95
USP40-215ENST00000484528 CCM2Q9BSQ5 444 aa20.98■□□□□ 0.95
USP40-215ENST00000484528 FEZ2Q9UHY8 353 aaPredicted RBP20.98■□□□□ 0.95
USP40-215ENST00000484528 MAST4O15021 2626 aa20.98■□□□□ 0.95
USP40-215ENST00000484528 GSAPA4D1B5 854 aa20.97■□□□□ 0.95
USP40-215ENST00000484528 ARHGAP6O43182 974 aa20.97■□□□□ 0.95
USP40-215ENST00000484528 SCRG1O75711 98 aa20.97■□□□□ 0.95
USP40-215ENST00000484528 CDH3P22223 829 aa20.97■□□□□ 0.95
USP40-215ENST00000484528 ACRV1P26436 265 aa20.97■□□□□ 0.95
USP40-215ENST00000484528 PDHA2P29803 388 aa20.97■□□□□ 0.95
USP40-215ENST00000484528 PREPP48147 710 aa20.97■□□□□ 0.95
USP40-215ENST00000484528 TUBB4BP68371 445 aa20.97■□□□□ 0.95
USP40-215ENST00000484528 PRKAA1Q13131 559 aa20.97■□□□□ 0.95
USP40-215ENST00000484528 TUBB2AQ13885 445 aa20.97■□□□□ 0.95
USP40-215ENST00000484528 GPR33Q49SQ1 333 aa20.97■□□□□ 0.95
USP40-215ENST00000484528 PRAMEF17Q5VTA0 474 aa20.97■□□□□ 0.95
USP40-215ENST00000484528 TMEM139Q8IV31 216 aa20.97■□□□□ 0.95
USP40-215ENST00000484528 UBL4BQ8N7F7 174 aa20.97■□□□□ 0.95
USP40-215ENST00000484528 LCN9Q8WX39 176 aa20.97■□□□□ 0.95
USP40-215ENST00000484528 ZNF501Q96CX3 271 aaPredicted RBP20.97■□□□□ 0.95
USP40-215ENST00000484528 FCRL4Q96PJ5 515 aa20.97■□□□□ 0.95
USP40-215ENST00000484528 TMEM121Q9BTD3 319 aa20.97■□□□□ 0.95
USP40-215ENST00000484528 TUBB2BQ9BVA1 445 aa20.97■□□□□ 0.95
USP40-215ENST00000484528 OR52A5Q9H2C5 316 aa20.97■□□□□ 0.95
USP40-215ENST00000484528 SRMSQ9H3Y6 488 aa20.97■□□□□ 0.95
USP40-215ENST00000484528 LRRC40Q9H9A6 602 aa20.97■□□□□ 0.95
USP40-215ENST00000484528 NLE1Q9NVX2 485 aaPredicted RBP20.97■□□□□ 0.95
USP40-215ENST00000484528 ANAPC2Q9UJX6 822 aa20.97■□□□□ 0.95
USP40-215ENST00000484528 POMT2Q9UKY4 750 aa20.97■□□□□ 0.95
USP40-215ENST00000484528 MAN2B2Q9Y2E5 1009 aa20.97■□□□□ 0.95
USP40-215ENST00000484528 PCDHGA6Q9Y5G7 932 aa20.97■□□□□ 0.95
USP40-215ENST00000484528 HEBP2Q9Y5Z4 205 aa20.97■□□□□ 0.95
USP40-215ENST00000484528 NAV2Q8IVL1 2488 aa20.96■□□□□ 0.95
USP40-215ENST00000484528 IGLV3-16A0A075B6K0 115 aa20.96■□□□□ 0.95
USP40-215ENST00000484528 TRBV5-4A0A0C4DH59 114 aa20.96■□□□□ 0.95
USP40-215ENST00000484528 SLC9B1P1A6NJY1 282 aa20.96■□□□□ 0.95
USP40-215ENST00000484528 C21orf140B9A014 251 aa20.96■□□□□ 0.95
USP40-215ENST00000484528 CPNE3O75131 537 aaKnown RBP20.96■□□□□ 0.95
USP40-215ENST00000484528 CASRP41180 1078 aa20.96■□□□□ 0.95
USP40-215ENST00000484528 GPS2Q13227 327 aa20.96■□□□□ 0.95
USP40-215ENST00000484528 KLF1Q13351 362 aaPredicted RBP20.96■□□□□ 0.95
USP40-215ENST00000484528 TMTC4Q5T4D3 741 aa20.96■□□□□ 0.95
USP40-215ENST00000484528 PIANPQ8IYJ0 282 aa20.96■□□□□ 0.95
USP40-215ENST00000484528 TTC13Q8NBP0 860 aa20.96■□□□□ 0.95
USP40-215ENST00000484528 PHC3Q8NDX5 983 aa20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms