RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 CNTNAP1P78357 1384 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 A0A1W2PQ72 361 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 BTN3A3O00478 584 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 SLC22A1O15245 554 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 CYP2C18P33260 490 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 GPC1P35052 558 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 TXNL4AP83876 142 aaKnown RBP13.33□□□□□ -0.28
USP42-206ENST00000479544 KRT74Q7RTS7 529 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 KRT73Q86Y46 540 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 TMEM126BQ8IUX1 230 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 TMEM102Q8N9M5 508 aaPredicted RBP13.33□□□□□ -0.28
USP42-206ENST00000479544 IL4I1Q96RQ9 567 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 NEK6Q9HC98 313 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 CMTM6Q9NX76 183 aa13.33□□□□□ -0.28
USP42-206ENST00000479544 TNPO3Q9Y5L0 923 aaKnown RBP13.33□□□□□ -0.28
USP42-206ENST00000479544 UPK3BL1B0FP48 263 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 UPK3BL2E5RIL1 263 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 MITFO75030 526 aaPredicted RBP13.32□□□□□ -0.28
USP42-206ENST00000479544 ECI2O75521 394 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 UROSP10746 265 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 POLR2IP36954 125 aaKnown RBP13.32□□□□□ -0.28
USP42-206ENST00000479544 FOXA1P55317 472 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 SH3BP2P78314 561 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 ABATP80404 500 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 SPANXN4Q5MJ08 99 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 SYCE2Q6PIF2 218 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 TMPRSS11AQ6ZMR5 421 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 PYCR2Q96C36 320 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 CCNB1IP1Q9NPC3 277 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 PRDM8Q9NQV8 689 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 SLAMF8Q9P0V8 285 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 CRNNQ9UBG3 495 aaPredicted RBP13.32□□□□□ -0.28
USP42-206ENST00000479544 PRELID1Q9Y255 219 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 TJP1Q07157 1748 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 E9PAM4 449 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 TULP3O75386 442 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 CYP11A1P05108 521 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 MAPK1P28482 360 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 TAF1CQ15572 869 aaPredicted RBP13.32□□□□□ -0.28
USP42-206ENST00000479544 FAM214AQ32MH5 1076 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 OR7D4Q8NG98 312 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 ART5Q96L15 291 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 C3orf30Q96M34 536 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 TEX12Q9BXU0 123 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 SPEF1Q9Y4P9 236 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 CACNA1SQ13698 1873 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 UBR3Q6ZT12 1888 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 CACNA1CQ13936 2221 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 A0A1W2PQH9 124 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 SUV39H1O43463 412 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 UGT2B11O75310 529 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 MBL2P11226 248 aaPredicted RBP13.32□□□□□ -0.28
USP42-206ENST00000479544 SLC6A2P23975 617 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 CCNCP24863 283 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 VARSP26640 1264 aaKnown RBP13.32□□□□□ -0.28
USP42-206ENST00000479544 RCVRNP35243 200 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 CLCNKBP51801 687 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 CDC42P60953 191 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 FAM189BP81408 668 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 ANGPT1Q15389 498 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 ANKRD26P1Q6NSI1 321 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 EPHX4Q8IUS5 362 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 GALNT12Q8IXK2 581 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 CORO1BQ9BR76 489 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 FKBPLQ9UIM3 349 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 CARD8Q9Y2G2 431 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 NUP205Q92621 2012 aa13.32□□□□□ -0.28
USP42-206ENST00000479544 OR6C70A6NIJ9 312 aa13.31□□□□□ -0.28
USP42-206ENST00000479544 FAM220BPB1ANY3 271 aa13.31□□□□□ -0.28
USP42-206ENST00000479544 RASAL1O95294 804 aa13.31□□□□□ -0.28
USP42-206ENST00000479544 TYMPP19971 482 aa13.31□□□□□ -0.28
USP42-206ENST00000479544 CDH12P55289 794 aa13.31□□□□□ -0.28
USP42-206ENST00000479544 CD47Q08722 323 aa13.31□□□□□ -0.28
USP42-206ENST00000479544 RFTN1Q14699 578 aaPredicted RBP13.31□□□□□ -0.28
USP42-206ENST00000479544 KCNJ8Q15842 424 aa13.31□□□□□ -0.28
USP42-206ENST00000479544 TTC23LQ6PF05 361 aa13.31□□□□□ -0.28
USP42-206ENST00000479544 CCBE1Q6UXH8 406 aaPredicted RBP13.31□□□□□ -0.28
USP42-206ENST00000479544 C16orf62Q7Z3J2 963 aa13.31□□□□□ -0.28
USP42-206ENST00000479544 ATAD1Q8NBU5 361 aa13.31□□□□□ -0.28
USP42-206ENST00000479544 FAM110BQ8TC76 370 aa13.31□□□□□ -0.28
USP42-206ENST00000479544 MIEF1Q9NQG6 463 aa13.31□□□□□ -0.28
USP42-206ENST00000479544 MARCH4Q9P2E8 410 aaPredicted RBP13.31□□□□□ -0.28
USP42-206ENST00000479544 ILVBLA1L0T0 632 aa13.31□□□□□ -0.28
USP42-206ENST00000479544 CXCL11O14625 94 aa13.31□□□□□ -0.28
USP42-206ENST00000479544 MT-ND2P03891 347 aa13.31□□□□□ -0.28
USP42-206ENST00000479544 TALDO1P37837 337 aa13.31□□□□□ -0.28
USP42-206ENST00000479544 TMBIM6P55061 237 aa13.31□□□□□ -0.28
USP42-206ENST00000479544 ERVK-8P63133 956 aa13.31□□□□□ -0.28
USP42-206ENST00000479544 MLLT1Q03111 559 aaPredicted RBP13.31□□□□□ -0.28
USP42-206ENST00000479544 ZNF404Q494X3 552 aa13.31□□□□□ -0.28
USP42-206ENST00000479544 ZNF678Q5SXM1 525 aa13.31□□□□□ -0.28
USP42-206ENST00000479544 PIH1D2Q8WWB5 315 aa13.31□□□□□ -0.28
USP42-206ENST00000479544 LGALS12Q96DT0 336 aa13.31□□□□□ -0.28
USP42-206ENST00000479544 HNRNPABQ99729 332 aaKnown RBP13.31□□□□□ -0.28
USP42-206ENST00000479544 SEZ6LQ9BYH1 1024 aa13.31□□□□□ -0.28
USP42-206ENST00000479544 SLC25A51Q9H1U9 297 aa13.31□□□□□ -0.28
USP42-206ENST00000479544 TRIM45Q9H8W5 580 aaPredicted RBP13.31□□□□□ -0.28
USP42-206ENST00000479544 RPS6KA6Q9UK32 745 aa13.31□□□□□ -0.28
USP42-206ENST00000479544 SHANK3Q9BYB0 1731 aa13.31□□□□□ -0.28
USP42-206ENST00000479544 OR10H3O60404 316 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms