RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 OR2AG1Q9H205 316 aa13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 TFB2MQ9H5Q4 396 aaKnown RBP13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 LRRC37A2A6NM11 1700 aa13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 SCN5AQ14524 2016 aa13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 MAN1A2O60476 641 aa13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 PSMA4P25789 261 aaKnown RBP13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 EIF4EBP2Q13542 120 aaPredicted RBP13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 SPANXN4Q5MJ08 99 aa13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 C2orf15Q8WU43 125 aaKnown RBP13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 ABLIM3O94929 683 aa13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 EPOP01588 193 aa13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 SOAT1P35610 550 aa13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 HK2P52789 917 aa13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 MAPKAPK3Q16644 382 aa13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 CYP27C1Q4G0S4 372 aa13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 TMEM31Q5JXX7 168 aa13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 C6orf136Q5SQH8 315 aa13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 OR2T11Q8NH01 316 aa13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 ZNF599Q96NL3 588 aa13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 IL17FQ96PD4 163 aa13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 OR52E6Q96RD3 313 aa13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 CCDC28BQ9BUN5 200 aa13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 ING2Q9H160 280 aa13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 IL21Q9HBE4 155 aa13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 DNMT3BQ9UBC3 853 aaKnown RBP13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 EIF3LQ9Y262 564 aaKnown RBP13.5□□□□□ -0.25
CCDC88A-211ENST00000471947 TMEM202A6NGA9 273 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 IGLV3-27P01718 113 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 ZDHHC11BP0C7U3 371 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 CYP4B1P13584 511 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 PTGER1P34995 402 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 HMGCLP35914 325 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 SLC6A11P48066 632 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 AP1S1P61966 158 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 CHIT1Q13231 466 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 SATL1Q86VE3 508 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 YAF2Q8IY57 180 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 MAGEC3Q8TD91 643 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 IRF7Q92985 503 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 PPP2R3CQ969Q6 453 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 CCT7Q99832 543 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 DCUN1D5Q9BTE7 237 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 C15orf38-AP3S2A0A0A6YYH1 394 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 DHRS12A0PJE2 317 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 CACNG3O60359 315 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 PTPN2P17706 415 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 LHCGRP22888 699 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 GPR1P46091 355 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 PSMD8P48556 350 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 BLMHQ13867 455 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 CARD16Q5EG05 197 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 SNX20Q7Z614 316 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 ARPINQ7Z6K5 226 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 TMPRSS11BQ86T26 416 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 PLD3Q8IV08 490 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 FUNDC1Q8IVP5 155 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 LILRA2Q8N149 483 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 SCML4Q8N228 414 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 STK40Q8N2I9 435 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 ENDOVQ8N8Q3 282 aaKnown RBP13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 PIH1D2Q8WWB5 315 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 JPH3Q8WXH2 748 aaPredicted RBP13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 JADE3Q92613 823 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 DLG3Q92796 817 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 TPD52L3Q96J77 140 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 ARMC7Q9H6L4 198 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 TBC1D30Q9Y2I9 924 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 CROCCQ5TZA2 2017 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 MYO10Q9HD67 2058 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 DNAH14Q0VDD8 3507 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 SIP14410 1827 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 NME4O00746 187 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 CEBPBP17676 345 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 PRKACGP22612 351 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 DGKGP49619 791 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 INPP5AQ14642 412 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 ZNF423Q2M1K9 1284 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 FAM20CQ8IXL6 584 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 FAM47BQ8NA70 645 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 RIN3Q8TB24 985 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 MCOLN3Q8TDD5 553 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 NSMCE2Q96MF7 247 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 TRIB3Q96RU7 358 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 MRM3Q9HC36 420 aaKnown RBP13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 INTS10Q9NVR2 710 aaKnown RBP13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 PCDHGA7Q9Y5G6 932 aa13.49□□□□□ -0.25
CCDC88A-211ENST00000471947 DFNA5O60443 496 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 CCSMST1Q4G0I0 132 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 TLDC1Q6P9B6 456 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 CYP20A1Q6UW02 462 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 LSRQ86X29 649 aaPredicted RBP13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 RAVER1Q8IY67 606 aaKnown RBP13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 LRRC58Q96CX6 371 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 SLC29A1Q99808 456 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 TTLL2Q9BWV7 592 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 DERL2Q9GZP9 239 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 LIN28AQ9H9Z2 209 aaKnown RBP13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 CAPN10Q9HC96 672 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 PCTPQ9UKL6 214 aa13.48□□□□□ -0.25
CCDC88A-211ENST00000471947 LRRC42Q9Y546 428 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms