RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 CTNNAL1Q9UBT7 734 aa14.47□□□□□ -0.09
COL9A3-209ENST00000469852 SLC39A10Q9ULF5 831 aa14.47□□□□□ -0.09
COL9A3-209ENST00000469852 CORO1CQ9ULV4 474 aaPredicted RBP14.47□□□□□ -0.09
COL9A3-209ENST00000469852 RUVBL2Q9Y230 463 aaKnown RBP14.47□□□□□ -0.09
COL9A3-209ENST00000469852 VWA7Q9Y334 891 aa14.47□□□□□ -0.09
COL9A3-209ENST00000469852 DHRS7Q9Y394 339 aa14.47□□□□□ -0.09
COL9A3-209ENST00000469852 COMMD10Q9Y6G5 202 aa14.47□□□□□ -0.09
COL9A3-209ENST00000469852 GOLGA4Q13439 2230 aaKnown RBP14.47□□□□□ -0.09
COL9A3-209ENST00000469852 KLHL33A6NCF5 533 aa14.46□□□□□ -0.09
COL9A3-209ENST00000469852 CASC3O15234 703 aaKnown RBP14.46□□□□□ -0.09
COL9A3-209ENST00000469852 VPS26AO75436 327 aa14.46□□□□□ -0.09
COL9A3-209ENST00000469852 ITGA2BP08514 1039 aa14.46□□□□□ -0.09
COL9A3-209ENST00000469852 ALPPL2P10696 532 aa14.46□□□□□ -0.09
COL9A3-209ENST00000469852 SPRP35270 261 aaPredicted RBP14.46□□□□□ -0.09
COL9A3-209ENST00000469852 MSH2P43246 934 aa14.46□□□□□ -0.09
COL9A3-209ENST00000469852 PLEKHS1Q5SXH7 462 aa14.46□□□□□ -0.09
COL9A3-209ENST00000469852 AGAP9Q5VTM2 703 aa14.46□□□□□ -0.09
COL9A3-209ENST00000469852 CAPRIN2Q6IMN6 1127 aaKnown RBP14.46□□□□□ -0.09
COL9A3-209ENST00000469852 ZCCHC8Q6NZY4 707 aaKnown RBP14.46□□□□□ -0.09
COL9A3-209ENST00000469852 PAQR3Q6TCH7 311 aa14.46□□□□□ -0.09
COL9A3-209ENST00000469852 WASH2PQ6VEQ5 465 aa14.46□□□□□ -0.09
COL9A3-209ENST00000469852 CMC1Q7Z7K0 106 aa14.46□□□□□ -0.09
COL9A3-209ENST00000469852 CPNE9Q8IYJ1 553 aa14.46□□□□□ -0.09
COL9A3-209ENST00000469852 SLC22A15Q8IZD6 547 aa14.46□□□□□ -0.09
COL9A3-209ENST00000469852 SFRP1Q8N474 314 aa14.46□□□□□ -0.09
COL9A3-209ENST00000469852 NETO1Q8TDF5 533 aa14.46□□□□□ -0.09
COL9A3-209ENST00000469852 GLMNQ92990 594 aa14.46□□□□□ -0.09
COL9A3-209ENST00000469852 TMEM159Q96B96 161 aa14.46□□□□□ -0.09
COL9A3-209ENST00000469852 WASH6PQ9NQA3 447 aa14.46□□□□□ -0.09
COL9A3-209ENST00000469852 TAS2R13Q9NYV9 303 aa14.46□□□□□ -0.09
COL9A3-209ENST00000469852 ACSL5Q9ULC5 683 aa14.46□□□□□ -0.09
COL9A3-209ENST00000469852 SPEGQ15772 3267 aa14.46□□□□□ -0.09
COL9A3-209ENST00000469852 CCDC151A5D8V7 595 aa14.45□□□□□ -0.1
COL9A3-209ENST00000469852 F8W8V4 182 aa14.45□□□□□ -0.1
COL9A3-209ENST00000469852 TM4SF5O14894 197 aa14.45□□□□□ -0.1
COL9A3-209ENST00000469852 PHGDHO43175 533 aaKnown RBP14.45□□□□□ -0.1
COL9A3-209ENST00000469852 SLCO2B1O94956 709 aa14.45□□□□□ -0.1
COL9A3-209ENST00000469852 WISP3O95389 354 aaPredicted RBP14.45□□□□□ -0.1
COL9A3-209ENST00000469852 APOA4P06727 396 aa14.45□□□□□ -0.1
COL9A3-209ENST00000469852 INHBAP08476 426 aa14.45□□□□□ -0.1
COL9A3-209ENST00000469852 SLC35G4P0C7Q5 338 aa14.45□□□□□ -0.1
COL9A3-209ENST00000469852 SDHBP21912 280 aa14.45□□□□□ -0.1
COL9A3-209ENST00000469852 CD9P21926 228 aa14.45□□□□□ -0.1
COL9A3-209ENST00000469852 ACADLP28330 430 aa14.45□□□□□ -0.1
COL9A3-209ENST00000469852 SLC19A1P41440 591 aa14.45□□□□□ -0.1
COL9A3-209ENST00000469852 UBE2IP63279 158 aaKnown RBP14.45□□□□□ -0.1
COL9A3-209ENST00000469852 RPA4Q13156 261 aa14.45□□□□□ -0.1
COL9A3-209ENST00000469852 DNAJC3Q13217 504 aa14.45□□□□□ -0.1
COL9A3-209ENST00000469852 TMED2Q15363 201 aa14.45□□□□□ -0.1
COL9A3-209ENST00000469852 RPE65Q16518 533 aa14.45□□□□□ -0.1
COL9A3-209ENST00000469852 MAP9Q49MG5 647 aa14.45□□□□□ -0.1
COL9A3-209ENST00000469852 C14orf28Q4W4Y0 310 aa14.45□□□□□ -0.1
COL9A3-209ENST00000469852 BEND6Q5SZJ8 279 aaPredicted RBP14.45□□□□□ -0.1
COL9A3-209ENST00000469852 MROH9Q5TGP6 573 aa14.45□□□□□ -0.1
COL9A3-209ENST00000469852 PDZD3Q86UT5 571 aa14.45□□□□□ -0.1
COL9A3-209ENST00000469852 ARL14Q8N4G2 192 aa14.45□□□□□ -0.1
COL9A3-209ENST00000469852 ARL10Q8N8L6 244 aa14.45□□□□□ -0.1
COL9A3-209ENST00000469852 FAM181AQ8N9Y4 354 aa14.45□□□□□ -0.1
COL9A3-209ENST00000469852 EPS8L3Q8TE67 593 aaKnown RBP14.45□□□□□ -0.1
COL9A3-209ENST00000469852 EEF1AKMT1Q8WVE0 214 aa14.45□□□□□ -0.1
COL9A3-209ENST00000469852 ASZ1Q8WWH4 475 aa14.45□□□□□ -0.1
COL9A3-209ENST00000469852 INPP5DQ92835 1189 aa14.45□□□□□ -0.1
COL9A3-209ENST00000469852 ZBTB9Q96C00 473 aa14.45□□□□□ -0.1
COL9A3-209ENST00000469852 CNDP2Q96KP4 475 aaKnown RBP14.45□□□□□ -0.1
COL9A3-209ENST00000469852 C12orf66Q96MD2 445 aa14.45□□□□□ -0.1
COL9A3-209ENST00000469852 NRTNQ99748 197 aa14.45□□□□□ -0.1
COL9A3-209ENST00000469852 DUSP23Q9BVJ7 150 aa14.45□□□□□ -0.1
COL9A3-209ENST00000469852 TRMT6Q9UJA5 497 aaKnown RBP14.45□□□□□ -0.1
COL9A3-209ENST00000469852 NFS1Q9Y697 457 aa14.45□□□□□ -0.1
COL9A3-209ENST00000469852 SMIM23A6NLE4 172 aa14.44□□□□□ -0.1
COL9A3-209ENST00000469852 FOXO6A8MYZ6 492 aa14.44□□□□□ -0.1
COL9A3-209ENST00000469852 PPM1DO15297 605 aa14.44□□□□□ -0.1
COL9A3-209ENST00000469852 TSPAN12O95859 305 aa14.44□□□□□ -0.1
COL9A3-209ENST00000469852 NUDT17P0C025 328 aa14.44□□□□□ -0.1
COL9A3-209ENST00000469852 SLCO1A2P46721 670 aa14.44□□□□□ -0.1
COL9A3-209ENST00000469852 CSRP3P50461 194 aa14.44□□□□□ -0.1
COL9A3-209ENST00000469852 POU4F1Q01851 419 aa14.44□□□□□ -0.1
COL9A3-209ENST00000469852 ABRQ12979 859 aa14.44□□□□□ -0.1
COL9A3-209ENST00000469852 PDAP1Q13442 181 aaKnown RBP14.44□□□□□ -0.1
COL9A3-209ENST00000469852 USP10Q14694 798 aaKnown RBP14.44□□□□□ -0.1
COL9A3-209ENST00000469852 ZKSCAN8Q15776 578 aaPredicted RBP14.44□□□□□ -0.1
COL9A3-209ENST00000469852 INAVAQ3KP66 663 aa14.44□□□□□ -0.1
COL9A3-209ENST00000469852 GUSBP11Q6P575 273 aa14.44□□□□□ -0.1
COL9A3-209ENST00000469852 ADGRD1Q6QNK2 874 aa14.44□□□□□ -0.1
COL9A3-209ENST00000469852 PIWIL4Q7Z3Z4 852 aaKnown RBP14.44□□□□□ -0.1
COL9A3-209ENST00000469852 ZNF761Q86XN6 746 aaPredicted RBP14.44□□□□□ -0.1
COL9A3-209ENST00000469852 PHC3Q8NDX5 983 aa14.44□□□□□ -0.1
COL9A3-209ENST00000469852 DEFB124Q8NES8 71 aa14.44□□□□□ -0.1
COL9A3-209ENST00000469852 ANKRD49Q8WVL7 239 aa14.44□□□□□ -0.1
COL9A3-209ENST00000469852 CNTNAP3BQ96NU0 1288 aa14.44□□□□□ -0.1
COL9A3-209ENST00000469852 CNTNAP3Q9BZ76 1288 aa14.44□□□□□ -0.1
COL9A3-209ENST00000469852 IMP3Q9NV31 184 aaKnown RBP14.44□□□□□ -0.1
COL9A3-209ENST00000469852 ZNF180Q9UJW8 692 aa14.44□□□□□ -0.1
COL9A3-209ENST00000469852 IKZF3Q9UKT9 509 aa14.44□□□□□ -0.1
COL9A3-209ENST00000469852 CDV3Q9UKY7 258 aaKnown RBP14.44□□□□□ -0.1
COL9A3-209ENST00000469852 PLAAQ9Y263 795 aa14.44□□□□□ -0.1
COL9A3-209ENST00000469852 RNF215Q9Y6U7 377 aa14.44□□□□□ -0.1
COL9A3-209ENST00000469852 ASXL3Q9C0F0 2248 aa14.43□□□□□ -0.1
COL9A3-209ENST00000469852 SPTBN2O15020 2390 aa14.43□□□□□ -0.1
COL9A3-209ENST00000469852 KIR2DS5A0A0G2JLQ3 304 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms