RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 ZNF212Q9UDV6 495 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 SEC63Q9UGP8 760 aaKnown RBP4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 DNPEPQ9ULA0 475 aa4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 TDRKHQ9Y2W6 561 aaKnown RBP4.79□□□□□ -1.64
CCDC88A-210ENST00000468534 ADGRF5Q8IZF2 1346 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 FAM230AA0A1W2PPH8 454 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 TRIM49BA6NDI0 452 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 SLC15A5A6NIM6 579 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 SAC3D1A6NKF1 404 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 F8WDY8 70 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 OGTO15294 1046 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 ACSL4O60488 711 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 SURF6O75683 361 aaKnown RBP4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 CIB2O75838 187 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 RASSF9O75901 435 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 AKAP3O75969 853 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 CLPTM1O96005 669 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 MT-ATP6P00846 226 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 CRYABP02511 175 aaKnown RBP4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 GLAP06280 429 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 ABHD2P08910 425 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 ERVK-10P10266 1014 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 CLUP10909 449 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 PRPS2P11908 318 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 ANPEPP15144 967 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 PECAM1P16284 738 aaPredicted RBP4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 ERCC2P18074 760 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 EPORP19235 508 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 PTPN6P29350 595 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 PRKAR2BP31323 418 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 SFNP31947 248 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 PCGF2P35227 344 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 MAP2K2P36507 400 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 CRKLP46109 303 aaKnown RBP4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 CDKN1BP46527 198 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 FASLGP48023 281 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 HTR6P50406 440 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 ALDH18A1P54886 795 aaKnown RBP4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 SNU13P55769 128 aaKnown RBP4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 TIRAPP58753 221 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 TDGQ13569 410 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 MFSD13AQ14CX5 517 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 KARSQ15046 597 aaKnown RBP4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 MAPRE2Q15555 327 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 CHRNA6Q15825 494 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 SMTNL2Q2TAL5 461 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 BTBD16Q32M84 506 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 TRIM60Q495X7 471 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 CFAP157Q5JU67 520 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 GRTP1Q5TC63 336 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 RAP1GAP2Q684P5 730 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 VSTM1Q6UX27 236 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 MEPCEQ7L2J0 689 aaKnown RBP4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 PIP4P1Q86T03 277 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 PIM3Q86V86 326 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 KBTBD6Q86V97 674 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 SYCE1Q8N0S2 351 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 FSTL5Q8N475 847 aaPredicted RBP4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 LINC01465Q8N7H1 131 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 PI4KAP1Q8N8J0 262 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 BHLHE23Q8NDY6 225 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 SETD9Q8NE22 299 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 AGBL3Q8NEM8 1001 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 TRPV1Q8NER1 839 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 MAIP1Q8WWC4 291 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 LIPHQ8WWY8 451 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 STARD8Q92502 1023 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 SPSB4Q96A44 273 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 TMCO6Q96DC7 493 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 CCDC51Q96ER9 411 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 THOC1Q96FV9 657 aaKnown RBP4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 WDYHV1Q96HA8 205 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 FAM71F1Q96KD3 344 aaPredicted RBP4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 FERMT1Q9BQL6 677 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 PIMREGQ9BSJ6 248 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 TPPP3Q9BW30 176 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 MRPL1Q9BYD6 325 aaKnown RBP4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 PCDHAC1Q9H158 963 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 SLC32A1Q9H598 525 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 LRRC19Q9H756 370 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 SEMA4BQ9NPR2 832 aaPredicted RBP4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 SPATS2LQ9NUQ6 558 aaKnown RBP4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 SDAD1Q9NVU7 687 aaKnown RBP eCLIP4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 FAM120CQ9NX05 1096 aaKnown RBP4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 WWOXQ9NZC7 414 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 DNMT3BQ9UBC3 853 aaKnown RBP4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 RGS17Q9UGC6 210 aaPredicted RBP4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 PADI1Q9ULC6 663 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 PPIEQ9UNP9 301 aaKnown RBP4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 STRAPQ9Y3F4 350 aaKnown RBP4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 PCDHB2Q9Y5E7 798 aa4.78□□□□□ -1.64
CCDC88A-210ENST00000468534 IQANK1A0A1B0GTG1 560 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 A0A1W2PN81 502 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 TCRBV21S2A2A0A5A6 115 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 GOLGA8OA6NCC3 632 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 FAM90A18PA6NE21 464 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 FAM90A16PA6NEW6 464 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 FAM90A20PA6NIJ5 464 aa4.77□□□□□ -1.65
CCDC88A-210ENST00000468534 FAM90A9PA6NNJ1 464 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms