RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 RHOP08100 348 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 SUOXP51687 545 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 NEK2P51955 445 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 PRKCQQ04759 706 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 SELPLGQ14242 412 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 CHRNA6Q15825 494 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 ASTLQ6HA08 431 aaPredicted RBP9.32□□□□□ -0.92
CUX1-206ENST00000437600 SFRP1Q8N474 314 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 CBR4Q8N4T8 237 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 PCYOX1LQ8NBM8 494 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 PROKR1Q8TCW9 393 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 FATE1Q969F0 183 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 FAM192AQ9GZU8 254 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 LTB4R2Q9NPC1 389 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 ZNF711Q9Y462 761 aa9.32□□□□□ -0.92
CUX1-206ENST00000437600 OAS3Q9Y6K5 1087 aaKnown RBP9.32□□□□□ -0.92
CUX1-206ENST00000437600 H3BSA7 217 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 ESRRBO95718 433 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 C1QCP02747 245 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 TTPAP49638 278 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 CLCN7P51798 805 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 GALNT1Q10472 559 aaPredicted RBP9.31□□□□□ -0.92
CUX1-206ENST00000437600 ARHGEF7Q14155 803 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 RFTN1Q14699 578 aaPredicted RBP9.31□□□□□ -0.92
CUX1-206ENST00000437600 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.31□□□□□ -0.92
CUX1-206ENST00000437600 NADK2Q4G0N4 442 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 SAMD4BQ5PRF9 694 aaKnown RBP9.31□□□□□ -0.92
CUX1-206ENST00000437600 ZNF648Q5T619 568 aaPredicted RBP9.31□□□□□ -0.92
CUX1-206ENST00000437600 BLOC1S3Q6QNY0 202 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 RBM44Q6ZP01 1051 aaKnown RBP9.31□□□□□ -0.92
CUX1-206ENST00000437600 TICAM1Q8IUC6 712 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 PIH1D2Q8WWB5 315 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 FOXJ1Q92949 421 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 GFM2Q969S9 779 aaKnown RBP9.31□□□□□ -0.92
CUX1-206ENST00000437600 CEP295NLQ96MC4 621 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 EMILIN2Q9BXX0 1053 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 PRM3Q9NNZ6 103 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 SDR39U1Q9NRG7 319 aaPredicted RBP9.31□□□□□ -0.92
CUX1-206ENST00000437600 INTS10Q9NVR2 710 aaKnown RBP9.31□□□□□ -0.92
CUX1-206ENST00000437600 ELOVL2Q9NXB9 296 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 ATXN10Q9UBB4 475 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 ZFC3H1O60293 1989 aaKnown RBP9.31□□□□□ -0.92
CUX1-206ENST00000437600 F5P12259 2224 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 SLC22A2O15244 555 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 LINC01565O15544 149 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 SLC22A3O75751 556 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 SMIM18P0DKX4 95 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 SLC2A4P14672 509 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 SLC26A3P40879 764 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 PPP3CCP48454 512 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 KCNK10P57789 538 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 HSPA14Q0VDF9 509 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 NR6A1Q15406 480 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 MAPRE2Q15555 327 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 CPSF6Q16630 551 aaKnown RBP eCLIP9.31□□□□□ -0.92
CUX1-206ENST00000437600 PLEKHG6Q3KR16 790 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 PYCR3Q53H96 274 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 OTUD3Q5T2D3 398 aaPredicted RBP9.31□□□□□ -0.92
CUX1-206ENST00000437600 ALG1LQ6GMV1 187 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 NANOGP8Q6NSW7 305 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 ZFP1Q6P2D0 407 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 CCDC149Q6ZUS6 474 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 GPRIN3Q6ZVF9 776 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 OFCC1Q8IZS5 231 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 PIAS4Q8N2W9 510 aaPredicted RBP9.31□□□□□ -0.92
CUX1-206ENST00000437600 LMNTD1Q8N9Z9 388 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 ADCY4Q8NFM4 1077 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 TBCDQ9BTW9 1192 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 C2orf49Q9BVC5 232 aaPredicted RBP9.31□□□□□ -0.92
CUX1-206ENST00000437600 BBS2Q9BXC9 721 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 NANOGQ9H9S0 305 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 ZDHHC4Q9NPG8 344 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 RHBDL2Q9NX52 303 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.31□□□□□ -0.92
CUX1-206ENST00000437600 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.31□□□□□ -0.92
CUX1-206ENST00000437600 CCDC154A6NI56 674 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 PRMT5O14744 637 aaPredicted RBP9.31□□□□□ -0.92
CUX1-206ENST00000437600 RPS17P08708 135 aaKnown RBP9.31□□□□□ -0.92
CUX1-206ENST00000437600 BPIP17213 487 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 HMGCLP35914 325 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 ZFP36L2P47974 494 aaKnown RBP9.31□□□□□ -0.92
CUX1-206ENST00000437600 NFKB2Q00653 900 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 LIPEQ05469 1076 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 PLCL1Q15111 1095 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 AP5B1Q2VPB7 878 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 ZIK1Q3SY52 487 aaPredicted RBP9.31□□□□□ -0.92
CUX1-206ENST00000437600 ACBD5Q5T8D3 534 aaPredicted RBP9.31□□□□□ -0.92
CUX1-206ENST00000437600 NKAPQ8N5F7 415 aaKnown RBP9.31□□□□□ -0.92
CUX1-206ENST00000437600 KRTCAP2Q8N6L1 136 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 GPR26Q8NDV2 337 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 VN1R2Q8NFZ6 395 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 ZFP28Q8NHY6 868 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 CYB5D2Q8WUJ1 264 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 ZFYVE19Q96K21 471 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 CLPBQ9H078 707 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 SLC52A3Q9NQ40 469 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 THEGQ9P2T0 379 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 SUCOQ9UBS9 1254 aaKnown RBP9.31□□□□□ -0.92
CUX1-206ENST00000437600 STOML2Q9UJZ1 356 aa9.31□□□□□ -0.92
CUX1-206ENST00000437600 OAZ3Q9UMX2 235 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms