RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 ARFGAP2Q8N6H7 521 aa9.9□□□□□ -0.82
CD44-207ENST00000425428 FAM46DQ8NEK8 389 aa9.9□□□□□ -0.82
CD44-207ENST00000425428 CFAP61Q8NHU2 1237 aa9.9□□□□□ -0.82
CD44-207ENST00000425428 STAG3L4Q8TBR4 150 aa9.9□□□□□ -0.82
CD44-207ENST00000425428 CD200R1Q8TD46 325 aa9.9□□□□□ -0.82
CD44-207ENST00000425428 CXorf40BQ96DE9 158 aa9.9□□□□□ -0.82
CD44-207ENST00000425428 ATP6V1G3Q96LB4 118 aa9.9□□□□□ -0.82
CD44-207ENST00000425428 OLFM1Q99784 485 aa9.9□□□□□ -0.82
CD44-207ENST00000425428 MCMBPQ9BTE3 642 aa9.9□□□□□ -0.82
CD44-207ENST00000425428 DERL2Q9GZP9 239 aa9.9□□□□□ -0.82
CD44-207ENST00000425428 GAREM1Q9H706 876 aa9.9□□□□□ -0.82
CD44-207ENST00000425428 TMCO1Q9UM00 188 aa9.9□□□□□ -0.82
CD44-207ENST00000425428 CSNK1G3Q9Y6M4 447 aa9.9□□□□□ -0.82
CD44-207ENST00000425428 LRP4O75096 1905 aa9.9□□□□□ -0.83
CD44-207ENST00000425428 ZNF839A8K0R7 811 aa9.89□□□□□ -0.83
CD44-207ENST00000425428 LRP3O75074 770 aa9.89□□□□□ -0.83
CD44-207ENST00000425428 SLCO2B1O94956 709 aa9.89□□□□□ -0.83
CD44-207ENST00000425428 ALDOAP04075 364 aaKnown RBP9.89□□□□□ -0.83
CD44-207ENST00000425428 NEFHP12036 1026 aa9.89□□□□□ -0.83
CD44-207ENST00000425428 BRAFP15056 766 aa9.89□□□□□ -0.83
CD44-207ENST00000425428 RXRGP48443 463 aa9.89□□□□□ -0.83
CD44-207ENST00000425428 RPIAP49247 311 aa9.89□□□□□ -0.83
CD44-207ENST00000425428 ASPHQ12797 758 aa9.89□□□□□ -0.83
CD44-207ENST00000425428 SP140Q13342 867 aa9.89□□□□□ -0.83
CD44-207ENST00000425428 ACAP2Q15057 778 aa9.89□□□□□ -0.83
CD44-207ENST00000425428 HLA-BQ31612 363 aa9.89□□□□□ -0.83
CD44-207ENST00000425428 UAP1L1Q3KQV9 507 aa9.89□□□□□ -0.83
CD44-207ENST00000425428 CCDC153Q494R4 210 aa9.89□□□□□ -0.83
CD44-207ENST00000425428 KDM7AQ6ZMT4 941 aa9.89□□□□□ -0.83
CD44-207ENST00000425428 RAB44Q7Z6P3 723 aaPredicted RBP9.89□□□□□ -0.83
CD44-207ENST00000425428 SLC9B2Q86UD5 537 aa9.89□□□□□ -0.83
CD44-207ENST00000425428 PIM3Q86V86 326 aa9.89□□□□□ -0.83
CD44-207ENST00000425428 SPATS2Q86XZ4 545 aaKnown RBP9.89□□□□□ -0.83
CD44-207ENST00000425428 ZNF547Q8IVP9 402 aa9.89□□□□□ -0.83
CD44-207ENST00000425428 CEP97Q8IW35 865 aa9.89□□□□□ -0.83
CD44-207ENST00000425428 SLC22A15Q8IZD6 547 aa9.89□□□□□ -0.83
CD44-207ENST00000425428 PRSS33Q8NF86 280 aa9.89□□□□□ -0.83
CD44-207ENST00000425428 GPBAR1Q8TDU6 330 aa9.89□□□□□ -0.83
CD44-207ENST00000425428 EEF1AKMT1Q8WVE0 214 aa9.89□□□□□ -0.83
CD44-207ENST00000425428 TMEM131Q92545 1883 aa9.89□□□□□ -0.83
CD44-207ENST00000425428 ISL2Q96A47 359 aa9.89□□□□□ -0.83
CD44-207ENST00000425428 PDLIM5Q96HC4 596 aaKnown RBP9.89□□□□□ -0.83
CD44-207ENST00000425428 TRIT1Q9H3H1 467 aaKnown RBP9.89□□□□□ -0.83
CD44-207ENST00000425428 NCKIPSDQ9NZQ3 722 aa9.89□□□□□ -0.83
CD44-207ENST00000425428 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.89□□□□□ -0.83
CD44-207ENST00000425428 POLG2Q9UHN1 485 aa9.89□□□□□ -0.83
CD44-207ENST00000425428 RNF112Q9ULX5 631 aa9.89□□□□□ -0.83
CD44-207ENST00000425428 ASF1AQ9Y294 204 aa9.89□□□□□ -0.83
CD44-207ENST00000425428 CUL9Q8IWT3 2517 aa9.89□□□□□ -0.83
CD44-207ENST00000425428 ADAMTS9Q9P2N4 1935 aa9.89□□□□□ -0.83
CD44-207ENST00000425428 MUC3AQ02505 3323 aa9.89□□□□□ -0.83
CD44-207ENST00000425428 KIR2DS5A0A0G2JLQ3 304 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 A0A0G2JNG1 304 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 SLC5A10A0PJK1 596 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 LMO7DNF2Z398 122 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 KIR2DS3K7RE56 304 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 BTN3A1O00481 513 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 SCAMP1O15126 338 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 SLC16A5O15375 505 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 SMIM24O75264 130 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 GPC4O75487 556 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 PIAS2O75928 621 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 ZWINTO95229 277 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 VIPP01282 170 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 ENO2P09104 434 aaPredicted RBP9.88□□□□□ -0.83
CD44-207ENST00000425428 SLC35E2BP0CK96 405 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 RPL10P27635 214 aaKnown RBP9.88□□□□□ -0.83
CD44-207ENST00000425428 PREPP48147 710 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 MAGOHP61326 146 aaKnown RBP9.88□□□□□ -0.83
CD44-207ENST00000425428 TCF15Q12870 199 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 ABRQ12979 859 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 KIR2DS5Q14953 304 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 ZNF423Q2M1K9 1284 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 UNC5DQ6UXZ4 953 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 WASH2PQ6VEQ5 465 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 MICALCLQ6ZW33 695 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 PDZD3Q86UT5 571 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 C4orf33Q8N1A6 199 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 ZNF548Q8NEK5 533 aaPredicted RBP9.88□□□□□ -0.83
CD44-207ENST00000425428 MAPK15Q8TD08 544 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 ZDHHC1Q8WTX9 485 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 NAT14Q8WUY8 206 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 TFGQ92734 400 aaPredicted RBP9.88□□□□□ -0.83
CD44-207ENST00000425428 SH3KBP1Q96B97 665 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 APOPT1Q96IL0 206 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 C12orf66Q96MD2 445 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 FERD3LQ96RJ6 166 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 SELENOSQ9BQE4 189 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 WWP1Q9H0M0 922 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 MVB12BQ9H7P6 319 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 CAPN10Q9HC96 672 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 SSU72Q9NP77 194 aaKnown RBP9.88□□□□□ -0.83
CD44-207ENST00000425428 WASH6PQ9NQA3 447 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 IMP3Q9NV31 184 aaKnown RBP9.88□□□□□ -0.83
CD44-207ENST00000425428 TAAR2Q9P1P5 351 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 LNPEPQ9UIQ6 1025 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 TSR3Q9UJK0 312 aaKnown RBP9.88□□□□□ -0.83
CD44-207ENST00000425428 PSMD13Q9UNM6 376 aa9.88□□□□□ -0.83
CD44-207ENST00000425428 ARHGEF17Q96PE2 2063 aaPredicted RBP9.88□□□□□ -0.83
CD44-207ENST00000425428 A0A1B0GTQ1 180 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms