RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 ZNF540Q8NDQ6 660 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 KIAA1191Q96A73 305 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 C1QTNF3Q9BXJ4 246 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 IKZF5Q9H5V7 419 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 POPDC3Q9HBV1 291 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 HEBP1Q9NRV9 189 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 NDFIP2Q9NV92 336 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 TMEM30AQ9NV96 361 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 QPCTLQ9NXS2 382 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 AGO1Q9UL18 857 aaKnown RBP10.54□□□□□ -0.72
USP54-204ENST00000422491 CARD8Q9Y2G2 431 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 CAB39Q9Y376 341 aaPredicted RBP10.54□□□□□ -0.72
USP54-204ENST00000422491 ORC6Q9Y5N6 252 aa10.54□□□□□ -0.72
USP54-204ENST00000422491 DSCR3O14972 297 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 ANKRD28O15084 1053 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 GSTA4O15217 222 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 SSX4O60224 188 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 CD4P01730 458 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 IGFBP5P24593 272 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 BAG6P46379 1132 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 KRT6CP48668 564 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 HUNKP57058 714 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 KRR1Q13601 381 aaKnown RBP10.53□□□□□ -0.72
USP54-204ENST00000422491 PLA2G4EQ3MJ16 856 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 RAB41Q5JT25 222 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 HABP4Q5JVS0 413 aaKnown RBP10.53□□□□□ -0.72
USP54-204ENST00000422491 BRMS1LQ5PSV4 323 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 ARTNQ5T4W7 220 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 GALNT5Q7Z7M9 940 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 TAC4Q86UU9 113 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 HIPK1Q86Z02 1210 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 ZMIZ2Q8NF64 920 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 OR10A6Q8NH74 314 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 GIPC2Q8TF65 315 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 SLC38A4Q969I6 547 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 SMOQ99835 787 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 MED10Q9BTT4 135 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 NXF3Q9H4D5 531 aaKnown RBP10.53□□□□□ -0.72
USP54-204ENST00000422491 GOLGA2P5Q9HBQ8 144 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 TM9SF3Q9HD45 589 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 CCNB1IP1Q9NPC3 277 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 VNN3Q9NY84 501 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 NUDT5Q9UKK9 219 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 ERVW-1Q9UQF0 538 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 ECI2O75521 394 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 MFN2O95140 757 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 G6PDP11413 515 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 LIPAP38571 399 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 PNPLA4P41247 253 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 CLK1P49759 484 aaKnown RBP10.53□□□□□ -0.72
USP54-204ENST00000422491 PLIN5Q00G26 463 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 SOX4Q06945 474 aaPredicted RBP10.53□□□□□ -0.72
USP54-204ENST00000422491 SIM2Q14190 667 aaPredicted RBP10.53□□□□□ -0.72
USP54-204ENST00000422491 PON2Q15165 354 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 ZNF544Q6NX49 715 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 SLC27A1Q6PCB7 646 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 SULF1Q8IWU6 871 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 STAG3L4Q8TBR4 150 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 CDADC1Q9BWV3 514 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 MAGIXQ9H6Y5 334 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 DCAF13Q9NV06 445 aaKnown RBP10.53□□□□□ -0.72
USP54-204ENST00000422491 OSER1Q9NX31 292 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 PCTPQ9UKL6 214 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 KCTD3Q9Y597 815 aa10.53□□□□□ -0.72
USP54-204ENST00000422491 CXCR6O00574 342 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 AIREO43918 545 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 SLC2A3P11169 496 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 CYP4B1P13584 511 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 HOXB8P17481 243 aaPredicted RBP10.52□□□□□ -0.73
USP54-204ENST00000422491 ALOX12P18054 663 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 ITGB6P18564 788 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 AKAP5P24588 427 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 AGTR2P50052 363 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 SEMA3AQ14563 771 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 IHHQ14623 411 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 KIAA0040Q15053 153 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 SHQ1Q6PI26 577 aaKnown RBP10.52□□□□□ -0.73
USP54-204ENST00000422491 DET1Q7L5Y6 550 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 SYTL1Q8IYJ3 562 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 UBQLNLQ8IYU4 475 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 BEND7Q8N7W2 519 aaPredicted RBP10.52□□□□□ -0.73
USP54-204ENST00000422491 SIMC1Q8NDZ2 872 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 FAM162AQ96A26 154 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 SLC10A4Q96EP9 437 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 BARD1Q99728 777 aaKnown RBP10.52□□□□□ -0.73
USP54-204ENST00000422491 ITPAQ9BY32 194 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 GABARAPL1Q9H0R8 117 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 SLC25A51Q9H1U9 297 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 RNF112Q9ULX5 631 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 COL4A4P53420 1690 aaPredicted RBP10.52□□□□□ -0.73
USP54-204ENST00000422491 SMIM28A0A1B0GU29 152 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 ELOVL7A1L3X0 281 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 PDZK1P1A8MUH7 402 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 EVPLLA8MZ36 301 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 IFRD1O00458 451 aaPredicted RBP10.52□□□□□ -0.73
USP54-204ENST00000422491 ENPP3O14638 875 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 ZW10O43264 779 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 LDB2O43679 373 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 SCELO95171 688 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 SNX4O95219 450 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms