RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 SLC41A3Q96GZ6 507 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 FANCFQ9NPI8 374 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 NPEPPSL1A6NEC2 478 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 PDLIM1O00151 329 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 AMPD1P23109 780 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 ZNF157P51786 506 aaPredicted RBP13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 ZNF773Q6PK81 442 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 USP51Q70EK9 711 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 TATDN2Q93075 761 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 PCDHB16Q9NRJ7 776 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 PCTPQ9UKL6 214 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 CAPN8A6NHC0 703 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 CAPN14A8MX76 684 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 E7EQ34 232 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 GMDSO60547 372 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 RAB36O95755 333 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 SLC26A5P58743 744 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 CREMQ03060 361 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 TRIM28Q13263 835 aaKnown RBP13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 ZNF529Q6P280 563 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 ZNF571Q7Z3V5 609 aaPredicted RBP13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 ZNF676Q8N7Q3 588 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 XAGE5Q8WWM1 108 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 B3GAT2Q9NPZ5 323 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 COL15A1P39059 1388 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 ZNF726A6NNF4 738 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 BOLA2-SMG1P6H3BVE0 249 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 TDGQ13569 410 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 DPF3Q92784 378 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 FEM1AQ9BSK4 669 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 TAS2R1Q9NYW7 299 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 HSPB11Q9Y547 144 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 EVPLQ92817 2033 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 FAM86B1E9PN63 330 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 TPST2O60704 377 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 AKAP3O75969 853 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 FAM171A1Q5VUB5 890 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 GSTCDQ8NEC7 633 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 OR7G2Q8NG99 324 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 PCDH10Q9P2E7 1040 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 GRIA2P42262 883 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 SLC6A3Q01959 620 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 SIM2Q14190 667 aaPredicted RBP13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 POM121L1PQ3SYA9 428 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 JAGN1Q8N5M9 183 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 C7orf50Q9BRJ6 194 aaKnown RBP13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 TRMOQ9BU70 441 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 RNF181Q9P0P0 153 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 ERVK-19Q9WJR5 959 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 IL1BP01584 269 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 SNAP47Q5SQN1 464 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 ZDHHC20Q5W0Z9 365 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 MOB2Q70IA6 237 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 YIPF7Q8N8F6 280 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 TCEAL7Q9BRU2 100 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 CDT1Q9H211 546 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 MYNNQ9NPC7 610 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 LPCAT4Q643R3 524 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 UNC5BQ8IZJ1 945 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 PEX13Q92968 403 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 PCDHB9Q9Y5E1 797 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 TM7SF2O76062 418 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 SLC25A14O95258 325 aaPredicted RBP13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 PAEPP09466 180 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 BCKDHAP12694 445 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 LAPTM5Q13571 262 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 ZNF283Q8N7M2 679 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 TCEA1P23193 301 aaKnown RBP13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 CCDC58Q4VC31 144 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 FAM35AQ86V20 835 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 PNO1Q9NRX1 252 aaKnown RBP13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 USP20Q9Y2K6 914 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 A0A1W2PRQ8 180 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 ALDH3B1P43353 468 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 SEZ6Q53EL9 994 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 CPNE9Q8IYJ1 553 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 CBR4Q8N4T8 237 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 ICE1Q9Y2F5 2266 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 ZNF608Q9ULD9 1512 aaPredicted RBP13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 TEX51A0A1B0GUA7 166 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 FAM230AA0A1W2PPH8 454 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 GABBR2O75899 941 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 CSTF2P33240 577 aaKnown RBP eCLIP13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 RORAP35398 523 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 CRADDP78560 199 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 ZNF674Q2M3X9 581 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 GLYATQ6IB77 296 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 UNC5AQ6ZN44 842 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 SLC30A2Q9BRI3 323 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 ELOVL2Q9NXB9 296 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 SMPD4Q9NXE4 827 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 PCDHGC3Q9UN70 934 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 TMED5Q9Y3A6 229 aa13.15□□□□□ -0.3
CCDC88A-204ENST00000413716 HRGP04196 525 aa13.15□□□□□ -0.31
CCDC88A-204ENST00000413716 NT5EP21589 574 aa13.15□□□□□ -0.31
CCDC88A-204ENST00000413716 CDH12P55289 794 aa13.15□□□□□ -0.31
CCDC88A-204ENST00000413716 OR12D2P58182 307 aa13.15□□□□□ -0.31
CCDC88A-204ENST00000413716 CNPY1Q3B7I2 92 aa13.15□□□□□ -0.31
CCDC88A-204ENST00000413716 RALGPS2Q86X27 583 aaPredicted RBP13.15□□□□□ -0.31
CCDC88A-204ENST00000413716 PSKH2Q96QS6 385 aa13.15□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms