RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 MEA1Q16626 185 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 ZNF528Q3MIS6 628 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 ACSM6Q6P461 480 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 TRIM65Q6PJ69 517 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 LCLAT1Q6UWP7 414 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 KYAT3Q6YP21 454 aaKnown RBP6.45□□□□□ -1.38
USP40-202ENST00000409945 ANKS1BQ7Z6G8 1248 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 PIGZQ86VD9 579 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 PNPLA1Q8N8W4 532 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 PRSS33Q8NF86 280 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 CPT1BQ92523 772 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 HTRA1Q92743 480 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 CD101Q93033 1021 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 CLDN23Q96B33 292 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 VPS50Q96JG6 964 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 XPO6Q96QU8 1125 aaKnown RBP6.45□□□□□ -1.38
USP40-202ENST00000409945 P2RY13Q9BPV8 354 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 MIS12Q9H081 205 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 CDCP1Q9H5V8 836 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 IL21RQ9HBE5 538 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 CNGB3Q9NQW8 809 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 ABCC13Q9NSE7 274 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 RAB23Q9ULC3 237 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 NFE2L3Q9Y4A8 694 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 WNT6Q9Y6F9 365 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 TICRRQ7Z2Z1 1910 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 KMT2EQ8IZD2 1858 aa6.45□□□□□ -1.38
USP40-202ENST00000409945 TYW5A2RUC4 315 aaKnown RBP6.44□□□□□ -1.38
USP40-202ENST00000409945 SMTNL1A8MU46 457 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 BECN2A8MW95 431 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 CAPN9O14815 690 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 ZNF500O60304 480 aaPredicted RBP6.44□□□□□ -1.38
USP40-202ENST00000409945 BEST1O76090 585 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 ADCY5O95622 1261 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 ZDHHC11BP0C7U3 371 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 NHLRC4P0CG21 123 aaPredicted RBP6.44□□□□□ -1.38
USP40-202ENST00000409945 IRF1P10914 325 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 ACP5P13686 325 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 MAKP20794 623 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 KRT9P35527 623 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 EIF2DP41214 584 aaKnown RBP6.44□□□□□ -1.38
USP40-202ENST00000409945 CXCL12P48061 93 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 PTH2RP49190 550 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 HARS2P49590 506 aaKnown RBP6.44□□□□□ -1.38
USP40-202ENST00000409945 AGTR2P50052 363 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 CCT8P50990 548 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 POLE2P56282 527 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 SUMO2P61956 95 aaKnown RBP6.44□□□□□ -1.38
USP40-202ENST00000409945 YWHAGP61981 247 aaKnown RBP eCLIP6.44□□□□□ -1.38
USP40-202ENST00000409945 MYL5Q02045 173 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 SYCP1Q15431 976 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 FILIP1LQ4L180 1135 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 TCP11X2Q5H9J9 407 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 TRMT11Q7Z4G4 463 aaKnown RBP6.44□□□□□ -1.38
USP40-202ENST00000409945 SPEM1Q8N4L4 309 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 ZMIZ2Q8NF64 920 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 IRGQQ8WZA9 623 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 HSFY1Q96LI6 401 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 SNX18Q96RF0 628 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 SLC22A12Q96S37 553 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 CRACR2AQ9BSW2 395 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 SYNCQ9H7C4 482 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 LIN7CQ9NUP9 197 aaKnown RBP6.44□□□□□ -1.38
USP40-202ENST00000409945 WDR35Q9P2L0 1181 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 RASAL2Q9UJF2 1139 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 SLC8A2Q9UPR5 921 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 UBE2J1Q9Y385 318 aaPredicted RBP6.44□□□□□ -1.38
USP40-202ENST00000409945 GREB1Q4ZG55 1949 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 OBSL1O75147 1896 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 O00370 1275 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 TRDMT1O14717 391 aaKnown RBP6.44□□□□□ -1.38
USP40-202ENST00000409945 NKX2-8O15522 239 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 APODP05090 189 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 ADRB1P08588 477 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 CCDC172P0C7W6 258 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 NR1H2P55055 460 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 CSTF1Q05048 431 aaKnown RBP6.44□□□□□ -1.38
USP40-202ENST00000409945 ADIGQ0VDE8 80 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 PCID2Q5JVF3 399 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 CRIP3Q6Q6R5 217 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 TTC30AQ86WT1 665 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 ZNF557Q8N988 423 aaPredicted RBP6.44□□□□□ -1.38
USP40-202ENST00000409945 GPR150Q8NGU9 434 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 UBA3Q8TBC4 463 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 DDX50Q9BQ39 737 aaKnown RBP6.44□□□□□ -1.38
USP40-202ENST00000409945 ABHD10Q9NUJ1 306 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 MTPAPQ9NVV4 582 aaKnown RBP eCLIP6.44□□□□□ -1.38
USP40-202ENST00000409945 TMEM51Q9NW97 253 aa6.44□□□□□ -1.38
USP40-202ENST00000409945 FBXO9Q9UK97 447 aaPredicted RBP6.44□□□□□ -1.38
USP40-202ENST00000409945 MYO16Q9Y6X6 1858 aa6.43□□□□□ -1.38
USP40-202ENST00000409945 HHLA1C9JL84 531 aa6.43□□□□□ -1.38
USP40-202ENST00000409945 CHRNB1P11230 501 aa6.43□□□□□ -1.38
USP40-202ENST00000409945 ARSAP15289 507 aa6.43□□□□□ -1.38
USP40-202ENST00000409945 TNFAIP3P21580 790 aa6.43□□□□□ -1.38
USP40-202ENST00000409945 NBL1P41271 181 aa6.43□□□□□ -1.38
USP40-202ENST00000409945 MTA1Q13330 715 aa6.43□□□□□ -1.38
USP40-202ENST00000409945 HSP90AA4PQ58FG1 418 aa6.43□□□□□ -1.38
USP40-202ENST00000409945 RAB41Q5JT25 222 aa6.43□□□□□ -1.38
USP40-202ENST00000409945 HECTD2Q5U5R9 776 aa6.43□□□□□ -1.38
USP40-202ENST00000409945 AMIGO2Q86SJ2 522 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms