RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 INPP5AQ14642 412 aa13.78□□□□□ -0.2
GPNMB-203ENST00000409458 PCBP2Q15366 365 aaKnown RBP eCLIP13.78□□□□□ -0.2
GPNMB-203ENST00000409458 TBC1D3GQ6DHY5 549 aa13.78□□□□□ -0.2
GPNMB-203ENST00000409458 CLEC6AQ6EIG7 209 aa13.78□□□□□ -0.2
GPNMB-203ENST00000409458 TBC1D3CQ6IPX1 549 aa13.78□□□□□ -0.2
GPNMB-203ENST00000409458 XKR5Q6UX68 686 aa13.78□□□□□ -0.2
GPNMB-203ENST00000409458 TBC1D3Q8IZP1 549 aaPredicted RBP13.78□□□□□ -0.2
GPNMB-203ENST00000409458 AGAP11Q8TF27 550 aa13.78□□□□□ -0.2
GPNMB-203ENST00000409458 ASB11Q8WXH4 323 aa13.78□□□□□ -0.2
GPNMB-203ENST00000409458 RHBDF1Q96CC6 855 aa13.78□□□□□ -0.2
GPNMB-203ENST00000409458 ASB2Q96Q27 587 aa13.78□□□□□ -0.2
GPNMB-203ENST00000409458 EGFL8Q99944 293 aa13.78□□□□□ -0.2
GPNMB-203ENST00000409458 TEX101Q9BY14 249 aa13.78□□□□□ -0.2
GPNMB-203ENST00000409458 SLC17A9Q9BYT1 436 aa13.78□□□□□ -0.2
GPNMB-203ENST00000409458 MID1IP1Q9NPA3 183 aa13.78□□□□□ -0.2
GPNMB-203ENST00000409458 FZD3Q9NPG1 666 aa13.78□□□□□ -0.2
GPNMB-203ENST00000409458 ARHGEF3Q9NR81 526 aa13.78□□□□□ -0.2
GPNMB-203ENST00000409458 PTBP2Q9UKA9 531 aaKnown RBP13.78□□□□□ -0.2
GPNMB-203ENST00000409458 SLC12A4Q9UP95 1085 aa13.78□□□□□ -0.2
GPNMB-203ENST00000409458 PDE10AQ9Y233 779 aa13.78□□□□□ -0.2
GPNMB-203ENST00000409458 NCKAP1Q9Y2A7 1128 aa13.78□□□□□ -0.2
GPNMB-203ENST00000409458 OR1A2Q9Y585 309 aa13.78□□□□□ -0.2
GPNMB-203ENST00000409458 SKAP2O75563 359 aaPredicted RBP13.77□□□□□ -0.21
GPNMB-203ENST00000409458 GSTM1P09488 218 aa13.77□□□□□ -0.21
GPNMB-203ENST00000409458 TARSP26639 723 aaKnown RBP13.77□□□□□ -0.21
GPNMB-203ENST00000409458 HSPA7P48741 367 aa13.77□□□□□ -0.21
GPNMB-203ENST00000409458 TPMTP51580 245 aa13.77□□□□□ -0.21
GPNMB-203ENST00000409458 GSTM4Q03013 218 aa13.77□□□□□ -0.21
GPNMB-203ENST00000409458 BNIP1Q12981 228 aa13.77□□□□□ -0.21
GPNMB-203ENST00000409458 SGCGQ13326 291 aa13.77□□□□□ -0.21
GPNMB-203ENST00000409458 TMEM31Q5JXX7 168 aa13.77□□□□□ -0.21
GPNMB-203ENST00000409458 RASGRP3Q8IV61 690 aa13.77□□□□□ -0.21
GPNMB-203ENST00000409458 UBTD2Q8WUN7 234 aa13.77□□□□□ -0.21
GPNMB-203ENST00000409458 HMGB4Q8WW32 186 aa13.77□□□□□ -0.21
GPNMB-203ENST00000409458 TMEM159Q96B96 161 aa13.77□□□□□ -0.21
GPNMB-203ENST00000409458 LINC00615Q96LM1 132 aaPredicted RBP13.77□□□□□ -0.21
GPNMB-203ENST00000409458 OR52B2Q96RD2 323 aa13.77□□□□□ -0.21
GPNMB-203ENST00000409458 SLC12A9Q9BXP2 914 aa13.77□□□□□ -0.21
GPNMB-203ENST00000409458 WDR55Q9H6Y2 383 aaPredicted RBP13.77□□□□□ -0.21
GPNMB-203ENST00000409458 WDR26Q9H7D7 661 aa13.77□□□□□ -0.21
GPNMB-203ENST00000409458 WWOXQ9NZC7 414 aa13.77□□□□□ -0.21
GPNMB-203ENST00000409458 APOBEC2Q9Y235 224 aaKnown RBP13.77□□□□□ -0.21
GPNMB-203ENST00000409458 TRAF6Q9Y4K3 522 aa13.77□□□□□ -0.21
GPNMB-203ENST00000409458 ZFC3H1O60293 1989 aaKnown RBP13.77□□□□□ -0.21
GPNMB-203ENST00000409458 GOLGA8QA0A0J9YX86 632 aa13.76□□□□□ -0.21
GPNMB-203ENST00000409458 GOLGA8OA6NCC3 632 aa13.76□□□□□ -0.21
GPNMB-203ENST00000409458 GOLGA8NF8WBI6 632 aa13.76□□□□□ -0.21
GPNMB-203ENST00000409458 GFYI3L273 518 aa13.76□□□□□ -0.21
GPNMB-203ENST00000409458 SLC16A5O15375 505 aa13.76□□□□□ -0.21
GPNMB-203ENST00000409458 MATN4O95460 622 aa13.76□□□□□ -0.21
GPNMB-203ENST00000409458 SERPINA6P08185 405 aa13.76□□□□□ -0.21
GPNMB-203ENST00000409458 ENO2P09104 434 aaPredicted RBP13.76□□□□□ -0.21
GPNMB-203ENST00000409458 PDHA2P29803 388 aa13.76□□□□□ -0.21
GPNMB-203ENST00000409458 ACSL1P33121 698 aa13.76□□□□□ -0.21
GPNMB-203ENST00000409458 TRIM23P36406 574 aa13.76□□□□□ -0.21
GPNMB-203ENST00000409458 SCTRP47872 440 aa13.76□□□□□ -0.21
GPNMB-203ENST00000409458 RPIAP49247 311 aa13.76□□□□□ -0.21
GPNMB-203ENST00000409458 FOXA1P55317 472 aa13.76□□□□□ -0.21
GPNMB-203ENST00000409458 NAA20P61599 178 aa13.76□□□□□ -0.21
GPNMB-203ENST00000409458 PRKCQQ04759 706 aa13.76□□□□□ -0.21
GPNMB-203ENST00000409458 BTKQ06187 659 aa13.76□□□□□ -0.21
GPNMB-203ENST00000409458 MAP7D1Q3KQU3 841 aa13.76□□□□□ -0.21
GPNMB-203ENST00000409458 SULT1C3Q6IMI6 304 aa13.76□□□□□ -0.21
GPNMB-203ENST00000409458 GOLGA7Q7Z5G4 137 aa13.76□□□□□ -0.21
GPNMB-203ENST00000409458 C11orf96Q7Z7L8 435 aa13.76□□□□□ -0.21
GPNMB-203ENST00000409458 ADHFE1Q8IWW8 467 aa13.76□□□□□ -0.21
GPNMB-203ENST00000409458 SLC22A15Q8IZD6 547 aa13.76□□□□□ -0.21
GPNMB-203ENST00000409458 AFAP1L2Q8N4X5 818 aa13.76□□□□□ -0.21
GPNMB-203ENST00000409458 FOXJ1Q92949 421 aa13.76□□□□□ -0.21
GPNMB-203ENST00000409458 FAR2Q96K12 515 aa13.76□□□□□ -0.21
GPNMB-203ENST00000409458 ZNF514Q96K75 400 aaPredicted RBP13.76□□□□□ -0.21
GPNMB-203ENST00000409458 KCNA7Q96RP8 456 aa13.76□□□□□ -0.21
GPNMB-203ENST00000409458 HGH1Q9BTY7 390 aa13.76□□□□□ -0.21
GPNMB-203ENST00000409458 PARVBQ9HBI1 364 aa13.76□□□□□ -0.21
GPNMB-203ENST00000409458 C2orf42Q9NWW7 574 aa13.76□□□□□ -0.21
GPNMB-203ENST00000409458 ARMCX1Q9P291 453 aa13.76□□□□□ -0.21
GPNMB-203ENST00000409458 GPR34Q9UPC5 381 aa13.76□□□□□ -0.21
GPNMB-203ENST00000409458 PRKAB1Q9Y478 270 aa13.76□□□□□ -0.21
GPNMB-203ENST00000409458 TNPO3Q9Y5L0 923 aaKnown RBP13.76□□□□□ -0.21
GPNMB-203ENST00000409458 KRBA1A5PL33 1030 aa13.75□□□□□ -0.21
GPNMB-203ENST00000409458 KRT87PA6NCN2 255 aa13.75□□□□□ -0.21
GPNMB-203ENST00000409458 SDHDO14521 159 aa13.75□□□□□ -0.21
GPNMB-203ENST00000409458 CHUKO15111 745 aa13.75□□□□□ -0.21
GPNMB-203ENST00000409458 POP7O75817 140 aaKnown RBP13.75□□□□□ -0.21
GPNMB-203ENST00000409458 CYP2A7P20853 494 aa13.75□□□□□ -0.21
GPNMB-203ENST00000409458 EPHA3P29320 983 aa13.75□□□□□ -0.21
GPNMB-203ENST00000409458 PRDX3P30048 256 aaKnown RBP13.75□□□□□ -0.21
GPNMB-203ENST00000409458 CDKL1Q00532 357 aa13.75□□□□□ -0.21
GPNMB-203ENST00000409458 ZP2Q05996 745 aa13.75□□□□□ -0.21
GPNMB-203ENST00000409458 ABRQ12979 859 aa13.75□□□□□ -0.21
GPNMB-203ENST00000409458 UBAP2LQ14157 1087 aaKnown RBP13.75□□□□□ -0.21
GPNMB-203ENST00000409458 RBBP7Q16576 425 aa13.75□□□□□ -0.21
GPNMB-203ENST00000409458 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.75□□□□□ -0.21
GPNMB-203ENST00000409458 SPDYAQ5MJ70 313 aa13.75□□□□□ -0.21
GPNMB-203ENST00000409458 KANK2Q63ZY3 851 aa13.75□□□□□ -0.21
GPNMB-203ENST00000409458 NEK5Q6P3R8 708 aa13.75□□□□□ -0.21
GPNMB-203ENST00000409458 SYVN1Q86TM6 617 aa13.75□□□□□ -0.21
GPNMB-203ENST00000409458 CFAP206Q8IYR0 622 aa13.75□□□□□ -0.21
GPNMB-203ENST00000409458 OR56A4Q8NGH8 313 aa13.75□□□□□ -0.21
GPNMB-203ENST00000409458 STON2Q8WXE9 905 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms