RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 PQLC1Q8N2U9 271 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 ZNF483Q8TF39 744 aaPredicted RBP10.93□□□□□ -0.66
TCOF1-203ENST00000394269 GFM2Q969S9 779 aaKnown RBP10.93□□□□□ -0.66
TCOF1-203ENST00000394269 MIEF2Q96C03 454 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 PPM1MQ96MI6 270 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 PKD2L2Q9NZM6 624 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 MAP10Q9P2G4 905 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 TNPO3Q9Y5L0 923 aaKnown RBP10.93□□□□□ -0.66
TCOF1-203ENST00000394269 SPTBN5Q9NRC6 3674 aaKnown RBP10.93□□□□□ -0.66
TCOF1-203ENST00000394269 WDFY4Q6ZS81 3184 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 PIKFYVEQ9Y2I7 2098 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 TBC1D3BA6NDS4 549 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 OTOL1A6NHN0 477 aaPredicted RBP10.93□□□□□ -0.66
TCOF1-203ENST00000394269 OR7A17O14581 309 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 SLC22A2O15244 555 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 ULK1O75385 1050 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 TULP3O75386 442 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 STK16O75716 305 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 MT-ND1P03886 318 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 CTSLP07711 333 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 NCK1P16333 377 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 EPB42P16452 691 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 PREPP48147 710 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 SLC22A15Q8IZD6 547 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 SFRP1Q8N474 314 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 PKP2Q99959 881 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 BCAP29Q9UHQ4 241 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 ZNF490Q9ULM2 529 aaPredicted RBP10.93□□□□□ -0.66
TCOF1-203ENST00000394269 LRCH1Q9Y2L9 728 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 IRAK3Q9Y616 596 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 TMEM202A6NGA9 273 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 H3BNX3 289 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 RFXAPO00287 272 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 OTCP00480 354 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 ANXA5P08758 320 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 ELFN1P0C7U0 828 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 ADH5P11766 374 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 ACADSP16219 412 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 ZNF77Q15935 545 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 PAGE3Q5JUK9 113 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 SLC2A7Q6PXP3 512 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 NXPE3Q969Y0 559 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 RSPRY1Q96DX4 576 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 MED8Q96G25 268 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 PFDN4Q9NQP4 134 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 SARDHQ9UL12 918 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 DTNAQ9Y4J8 743 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 FAM149AA5PLN7 773 aa10.92□□□□□ -0.66
TCOF1-203ENST00000394269 PRR23AA6NEV1 266 aa10.92□□□□□ -0.66
TCOF1-203ENST00000394269 C16orf96A6NNT2 1141 aa10.92□□□□□ -0.66
TCOF1-203ENST00000394269 WDR47O94967 919 aa10.92□□□□□ -0.66
TCOF1-203ENST00000394269 MTHFD1P11586 935 aaKnown RBP10.92□□□□□ -0.66
TCOF1-203ENST00000394269 ATP1B2P14415 290 aaPredicted RBP10.92□□□□□ -0.66
TCOF1-203ENST00000394269 ADARP55265 1226 aaKnown RBP10.92□□□□□ -0.66
TCOF1-203ENST00000394269 FBXL19Q6PCT2 694 aa10.92□□□□□ -0.66
TCOF1-203ENST00000394269 AHI1Q8N157 1196 aa10.92□□□□□ -0.66
TCOF1-203ENST00000394269 RNF175Q8N4F7 328 aa10.92□□□□□ -0.66
TCOF1-203ENST00000394269 FAM110BQ8TC76 370 aa10.92□□□□□ -0.66
TCOF1-203ENST00000394269 EME1Q96AY2 570 aa10.92□□□□□ -0.66
TCOF1-203ENST00000394269 ABHD8Q96I13 439 aa10.92□□□□□ -0.66
TCOF1-203ENST00000394269 TRIM54Q9BYV2 358 aa10.92□□□□□ -0.66
TCOF1-203ENST00000394269 KCTD5Q9NXV2 234 aa10.92□□□□□ -0.66
TCOF1-203ENST00000394269 IL36AQ9UHA7 158 aa10.92□□□□□ -0.66
TCOF1-203ENST00000394269 TMPRSS11EQ9UL52 423 aa10.92□□□□□ -0.66
TCOF1-203ENST00000394269 PSMD13Q9UNM6 376 aa10.92□□□□□ -0.66
TCOF1-203ENST00000394269 SLC22A14Q9Y267 594 aa10.92□□□□□ -0.66
TCOF1-203ENST00000394269 AKAP10O43572 662 aa10.92□□□□□ -0.66
TCOF1-203ENST00000394269 CYP17A1P05093 508 aa10.92□□□□□ -0.66
TCOF1-203ENST00000394269 PBX2P40425 430 aa10.92□□□□□ -0.66
TCOF1-203ENST00000394269 CSNK1DP48730 415 aa10.92□□□□□ -0.66
TCOF1-203ENST00000394269 POLR2JP52435 117 aaKnown RBP10.92□□□□□ -0.66
TCOF1-203ENST00000394269 ZNF284Q2VY69 593 aa10.92□□□□□ -0.66
TCOF1-203ENST00000394269 RARS2Q5T160 578 aaKnown RBP10.92□□□□□ -0.66
TCOF1-203ENST00000394269 DHFR2Q86XF0 187 aa10.92□□□□□ -0.66
TCOF1-203ENST00000394269 PHYKPLQ8IUZ5 450 aa10.92□□□□□ -0.66
TCOF1-203ENST00000394269 LRTOMTQ8WZ04 291 aa10.92□□□□□ -0.66
TCOF1-203ENST00000394269 RHBDF1Q96CC6 855 aa10.92□□□□□ -0.66
TCOF1-203ENST00000394269 AP2M1Q96CW1 435 aa10.92□□□□□ -0.66
TCOF1-203ENST00000394269 LMLNQ96KR4 655 aa10.92□□□□□ -0.66
TCOF1-203ENST00000394269 ZNF641Q96N77 438 aaPredicted RBP10.92□□□□□ -0.66
TCOF1-203ENST00000394269 SDR39U1Q9NRG7 319 aaPredicted RBP10.92□□□□□ -0.66
TCOF1-203ENST00000394269 USP22Q9UPT9 525 aa10.92□□□□□ -0.66
TCOF1-203ENST00000394269 PRKAB1Q9Y478 270 aa10.92□□□□□ -0.66
TCOF1-203ENST00000394269 VPS13AQ96RL7 3174 aa10.92□□□□□ -0.66
TCOF1-203ENST00000394269 PRRT4C9JH25 899 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 CFAP99D6REC4 459 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 TIPRLO75663 272 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 RNASEH2AO75792 299 aaKnown RBP10.91□□□□□ -0.66
TCOF1-203ENST00000394269 LRATO95237 230 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 TIMP2P16035 220 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 HALP42357 657 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 ILF2Q12905 390 aaKnown RBP10.91□□□□□ -0.66
TCOF1-203ENST00000394269 SYTL3Q4VX76 610 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 SAMD4BQ5PRF9 694 aaKnown RBP10.91□□□□□ -0.66
TCOF1-203ENST00000394269 MACC1Q6ZN28 852 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 LILRA2Q8N149 483 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 LRRC58Q96CX6 371 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 TUBGCP5Q96RT8 1024 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 ZNF382Q96SR6 550 aa10.91□□□□□ -0.66
TCOF1-203ENST00000394269 CD244Q9BZW8 370 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms