RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 IL17FQ96PD4 163 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 TSGA13Q96PP4 275 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 APOBEC3BQ9UH17 382 aaKnown RBP10.14□□□□□ -0.79
COL6A3-205ENST00000392004 V9GYQ6 96 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 PARP14Q460N5 1801 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 TCRBV5S1A1TA0A578 114 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 OR52A4PA6NMU1 304 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 SYCE1LA8MT33 242 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 NRG2O14511 850 aaPredicted RBP10.14□□□□□ -0.79
COL6A3-205ENST00000392004 ZDHHC11BP0C7U3 371 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 SLC2A4P14672 509 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 BPIP17213 487 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 TNNI3P19429 210 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 C5AR1P21730 350 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 NSG1P42857 185 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 ADGRD1Q6QNK2 874 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 Q6ZSR6 202 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 SNX20Q7Z614 316 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 ALYREFQ86V81 257 aaKnown RBP10.14□□□□□ -0.79
COL6A3-205ENST00000392004 KBTBD2Q8IY47 623 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 BANPQ8N9N5 519 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 RBM15BQ8NDT2 890 aaKnown RBP10.14□□□□□ -0.79
COL6A3-205ENST00000392004 ZCCHC10Q8TBK6 192 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 NCLNQ969V3 563 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 NMD3Q96D46 503 aaKnown RBP10.14□□□□□ -0.79
COL6A3-205ENST00000392004 FCRL3Q96P31 734 aaPredicted RBP10.14□□□□□ -0.79
COL6A3-205ENST00000392004 PHACTR1Q9C0D0 580 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 IL21RQ9HBE5 538 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 KCNK4Q9NYG8 393 aa10.14□□□□□ -0.79
COL6A3-205ENST00000392004 ARID1BQ8NFD5 2236 aaPredicted RBP10.14□□□□□ -0.79
COL6A3-205ENST00000392004 C5orf67F2Z3F1 127 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 UBXN8O00124 270 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 CRABP2P29373 138 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 CLCN5P51795 746 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 TBCCQ15814 346 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 GRAMD1BQ3KR37 738 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 IER5LQ5T953 404 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 FAM45BPQ6NSW5 357 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 IL27RAQ6UWB1 636 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 ZBTB2Q8N680 514 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 OR6Y1Q8NGX8 325 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 FAM45AQ8TCE6 357 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 Q9H521 79 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 NOL6Q9H6R4 1146 aaKnown RBP10.13□□□□□ -0.79
COL6A3-205ENST00000392004 EML4Q9HC35 981 aaKnown RBP10.13□□□□□ -0.79
COL6A3-205ENST00000392004 PRUNE2Q8WUY3 3088 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 hCG_2014768A0A024R1R8 64 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 SAP18O00422 153 aaKnown RBP10.13□□□□□ -0.79
COL6A3-205ENST00000392004 LILRB3O75022 631 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 LYPLA1O75608 230 aaPredicted RBP10.13□□□□□ -0.79
COL6A3-205ENST00000392004 SIX3O95343 332 aaPredicted RBP10.13□□□□□ -0.79
COL6A3-205ENST00000392004 APBB3O95704 486 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 GPC1P35052 558 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 ZNF789Q5FWF6 425 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 DUS1LQ6P1R4 473 aaKnown RBP10.13□□□□□ -0.79
COL6A3-205ENST00000392004 SELENOMQ8WWX9 145 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 PRR11Q96HE9 360 aaPredicted RBP10.13□□□□□ -0.79
COL6A3-205ENST00000392004 MPP4Q96JB8 637 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 ILKAPQ9H0C8 392 aaPredicted RBP10.13□□□□□ -0.79
COL6A3-205ENST00000392004 AKAP7Q9P0M2 348 aaPredicted RBP10.13□□□□□ -0.79
COL6A3-205ENST00000392004 FETUBQ9UGM5 382 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 MTF2Q9Y483 593 aaPredicted RBP10.13□□□□□ -0.79
COL6A3-205ENST00000392004 BDKRB1P46663 353 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 CYP4F3Q08477 520 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 MINDY4Q4G0A6 757 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 TMEM196Q5HYL7 178 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 BEND5Q7L4P6 421 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 ICA1LQ8NDH6 482 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 GPR26Q8NDV2 337 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 TFGQ92734 400 aaPredicted RBP10.13□□□□□ -0.79
COL6A3-205ENST00000392004 NT5C3BQ969T7 300 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 CLPTM1LQ96KA5 538 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 ZNF641Q96N77 438 aaPredicted RBP10.13□□□□□ -0.79
COL6A3-205ENST00000392004 KLHL4Q9C0H6 718 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 SRMSQ9H3Y6 488 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 ADA2Q9NZK5 511 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 KLHL20Q9Y2M5 609 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 CACNA1BQ00975 2339 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 LOC285556D6RIA3 1793 aa10.13□□□□□ -0.79
COL6A3-205ENST00000392004 SMIM31A0A1B0GVY4 71 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 ANKDD1BA6NHY2 528 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 C9JVG2 144 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 DCXO43602 365 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 LRATO95237 230 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 TIMP2P16035 220 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 NFE2L1Q14494 772 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 KCNJ11Q14654 390 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 AASDHQ4L235 1098 aaPredicted RBP10.12□□□□□ -0.79
COL6A3-205ENST00000392004 MPP7Q5T2T1 576 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 LRRTM4Q86VH4 590 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 ARRDC3Q96B67 414 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 GALNT8Q9NY28 637 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 AIM2O14862 343 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 TRIM13O60858 407 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 SEC22BO75396 215 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 ECI2O75521 394 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 RPN2P04844 631 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 SRPRAP08240 638 aaKnown RBP10.12□□□□□ -0.79
COL6A3-205ENST00000392004 ALOX15P16050 662 aaPredicted RBP10.12□□□□□ -0.79
COL6A3-205ENST00000392004 NDUFV2P19404 249 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms