RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 NSUN3Q9H649 340 aaKnown RBP10.65□□□□□ -0.7
NEDD9-201ENST00000379433 SCPEP1Q9HB40 452 aa10.65□□□□□ -0.7
NEDD9-201ENST00000379433 RC3H2Q9HBD1 1191 aaKnown RBP10.65□□□□□ -0.7
NEDD9-201ENST00000379433 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.65□□□□□ -0.7
NEDD9-201ENST00000379433 MBD1Q9UIS9 605 aaPredicted RBP10.65□□□□□ -0.7
NEDD9-201ENST00000379433 C15orf41Q9Y2V0 281 aa10.65□□□□□ -0.7
NEDD9-201ENST00000379433 TRIOBPQ9H2D6 2365 aa10.65□□□□□ -0.71
NEDD9-201ENST00000379433 NUMA1Q14980 2115 aa10.65□□□□□ -0.71
NEDD9-201ENST00000379433 HGFP14210 728 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 BPIP17213 487 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 IDUAP35475 653 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 DIO3P55073 304 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 CAPRIN1Q14444 709 aaKnown RBP10.64□□□□□ -0.71
NEDD9-201ENST00000379433 DNAL1Q4LDG9 190 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 LPCAT4Q643R3 524 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 SPATA24Q86W54 205 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.64□□□□□ -0.71
NEDD9-201ENST00000379433 SPARTQ8N0X7 666 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 MRPL43Q8N983 215 aaKnown RBP10.64□□□□□ -0.71
NEDD9-201ENST00000379433 GPR26Q8NDV2 337 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 RDH11Q8TC12 318 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 FOXJ1Q92949 421 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 SPATA16Q9BXB7 569 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 DCLRE1BQ9H816 532 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 IL17CQ9P0M4 197 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 DNAJC15Q9Y5T4 150 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 GLYATL1P3A0A0U1RQE8 302 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 DNAJA2O60884 412 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 OR4F21O95013 312 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 MTHFD2P13995 350 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 IMPDH1P20839 514 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 CPOXP36551 454 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 METAP1P53582 386 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 HERVK_113P63132 956 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 CLCQ05315 142 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 RIPK1Q13546 671 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 VPS26BQ4G0F5 336 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 ARSIQ5FYB1 569 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 PPP2R2DQ66LE6 453 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 AFAP1L2Q8N4X5 818 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 TWIST2Q8WVJ9 160 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 PIH1D2Q8WWB5 315 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.64□□□□□ -0.71
NEDD9-201ENST00000379433 VPS33AQ96AX1 596 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 C19orf60Q96EN9 201 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 NRBF2Q96F24 287 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 ERVK-6Q9BXR3 956 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 AKTIPQ9H8T0 292 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 SYTL2Q9HCH5 934 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 TRAFD1O14545 582 aaPredicted RBP10.64□□□□□ -0.71
NEDD9-201ENST00000379433 PRMT5O14744 637 aaPredicted RBP10.64□□□□□ -0.71
NEDD9-201ENST00000379433 PFDN6O15212 129 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 CEBPBP17676 345 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 BMPR1AP36894 532 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 THOP1P52888 689 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 GSTM4Q03013 218 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 AAK1Q2M2I8 961 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 ATP13A5Q4VNC0 1218 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 SETMARQ53H47 684 aaPredicted RBP10.64□□□□□ -0.71
NEDD9-201ENST00000379433 TMEM240Q5SV17 173 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 KYQ8NBH2 561 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 OR6Y1Q8NGX8 325 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 NRG4Q8WWG1 115 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 FUBP1Q96AE4 644 aaKnown RBP10.64□□□□□ -0.71
NEDD9-201ENST00000379433 ALG14Q96F25 216 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 LRCH3Q96II8 777 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 NOL11Q9H8H0 719 aaKnown RBP10.64□□□□□ -0.71
NEDD9-201ENST00000379433 WDR41Q9HAD4 459 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 PARVBQ9HBI1 364 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 DPP7Q9UHL4 492 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 TMCO1Q9UM00 188 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 COQ6Q9Y2Z9 468 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 OR51B4Q9Y5P0 310 aa10.64□□□□□ -0.71
NEDD9-201ENST00000379433 RGSL1A5PLK6 1076 aa10.63□□□□□ -0.71
NEDD9-201ENST00000379433 F8W8V4 182 aa10.63□□□□□ -0.71
NEDD9-201ENST00000379433 PSMD12O00232 456 aaPredicted RBP10.63□□□□□ -0.71
NEDD9-201ENST00000379433 SNPHO15079 494 aa10.63□□□□□ -0.71
NEDD9-201ENST00000379433 TPST1O60507 370 aa10.63□□□□□ -0.71
NEDD9-201ENST00000379433 H2AFYO75367 372 aaKnown RBP10.63□□□□□ -0.71
NEDD9-201ENST00000379433 EFEMP2O95967 443 aa10.63□□□□□ -0.71
NEDD9-201ENST00000379433 IL1BP01584 269 aa10.63□□□□□ -0.71
NEDD9-201ENST00000379433 CYP17A1P05093 508 aa10.63□□□□□ -0.71
NEDD9-201ENST00000379433 ITGALP20701 1170 aa10.63□□□□□ -0.71
NEDD9-201ENST00000379433 SNRPD1P62314 119 aaKnown RBP10.63□□□□□ -0.71
NEDD9-201ENST00000379433 FRG1Q14331 258 aaKnown RBP10.63□□□□□ -0.71
NEDD9-201ENST00000379433 RFTN1Q14699 578 aaPredicted RBP10.63□□□□□ -0.71
NEDD9-201ENST00000379433 Q6ZVL8 140 aa10.63□□□□□ -0.71
NEDD9-201ENST00000379433 SLC22A9Q8IVM8 553 aa10.63□□□□□ -0.71
NEDD9-201ENST00000379433 CD200R1Q8TD46 325 aa10.63□□□□□ -0.71
NEDD9-201ENST00000379433 TADA1Q96BN2 335 aa10.63□□□□□ -0.71
NEDD9-201ENST00000379433 RAD9AQ99638 391 aa10.63□□□□□ -0.71
NEDD9-201ENST00000379433 TUBA1CQ9BQE3 449 aa10.63□□□□□ -0.71
NEDD9-201ENST00000379433 SLC25A13Q9UJS0 675 aa10.63□□□□□ -0.71
NEDD9-201ENST00000379433 CFL2Q9Y281 166 aa10.63□□□□□ -0.71
NEDD9-201ENST00000379433 A0A0J9YYE9 177 aa10.63□□□□□ -0.71
NEDD9-201ENST00000379433 TRPC5OSA6NMA1 111 aa10.63□□□□□ -0.71
NEDD9-201ENST00000379433 HNRNPCL1O60812 293 aaKnown RBP10.63□□□□□ -0.71
NEDD9-201ENST00000379433 TRBC1P01850 177 aa10.63□□□□□ -0.71
NEDD9-201ENST00000379433 THRAP10827 490 aa10.63□□□□□ -0.71
NEDD9-201ENST00000379433 PABPC1P11940 636 aaKnown RBP10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms