RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 HSPA13P48723 471 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 BNIP2Q12982 314 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 TBPL2Q6SJ96 375 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 ZBTB2Q8N680 514 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 TMIGD2Q96BF3 282 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 KCTD14Q9BQ13 255 aaPredicted RBP13.14□□□□□ -0.31
CCDC3-202ENST00000378839 SEZ6LQ9BYH1 1024 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 ABCB8Q9NUT2 735 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 SMOXQ9NWM0 555 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 LEF1Q9UJU2 399 aaPredicted RBP13.14□□□□□ -0.31
CCDC3-202ENST00000378839 OAZ3Q9UMX2 235 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 PIKFYVEQ9Y2I7 2098 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 CLIC3O95833 236 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 CCL5P13501 91 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 EMX2Q04743 252 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 NR6A1Q15406 480 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 CYP51A1Q16850 503 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 SLC5A9Q2M3M2 681 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 LRRC66Q68CR7 880 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 RETSATQ6NUM9 610 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 FIBCD1Q8N539 461 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 FIBINQ8TAL6 211 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 OSBPL11Q9BXB4 747 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 IKZF5Q9H5V7 419 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 CARS2Q9HA77 564 aaKnown RBP13.14□□□□□ -0.31
CCDC3-202ENST00000378839 HCFC1R1Q9NWW0 138 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 SPG21Q9NZD8 308 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 GNPTGQ9UJJ9 305 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 LTBP2Q14767 1821 aa13.13□□□□□ -0.31
CCDC3-202ENST00000378839 ANKRD33BA6NCL7 494 aa13.13□□□□□ -0.31
CCDC3-202ENST00000378839 AGAP14A8MT82 685 aa13.13□□□□□ -0.31
CCDC3-202ENST00000378839 LINC00271P0C7V0 271 aa13.13□□□□□ -0.31
CCDC3-202ENST00000378839 CDH15P55291 814 aa13.13□□□□□ -0.31
CCDC3-202ENST00000378839 FXNQ16595 210 aa13.13□□□□□ -0.31
CCDC3-202ENST00000378839 ATP13A5Q4VNC0 1218 aa13.13□□□□□ -0.31
CCDC3-202ENST00000378839 MACC1Q6ZN28 852 aa13.13□□□□□ -0.31
CCDC3-202ENST00000378839 MILR1Q7Z6M3 343 aa13.13□□□□□ -0.31
CCDC3-202ENST00000378839 NXPE1Q8N323 547 aa13.13□□□□□ -0.31
CCDC3-202ENST00000378839 BIRC7Q96CA5 298 aa13.13□□□□□ -0.31
CCDC3-202ENST00000378839 MRPS26Q9BYN8 205 aaKnown RBP13.13□□□□□ -0.31
CCDC3-202ENST00000378839 CD244Q9BZW8 370 aa13.13□□□□□ -0.31
CCDC3-202ENST00000378839 EPB41L1Q9H4G0 881 aa13.13□□□□□ -0.31
CCDC3-202ENST00000378839 SOX17Q9H6I2 414 aaPredicted RBP13.13□□□□□ -0.31
CCDC3-202ENST00000378839 SLC6A13Q9NSD5 602 aa13.13□□□□□ -0.31
CCDC3-202ENST00000378839 LOC730098B7Z3J9 87 aa13.13□□□□□ -0.31
CCDC3-202ENST00000378839 LEFTY2O00292 366 aa13.13□□□□□ -0.31
CCDC3-202ENST00000378839 AREL1O15033 823 aa13.13□□□□□ -0.31
CCDC3-202ENST00000378839 CCR7P32248 378 aa13.13□□□□□ -0.31
CCDC3-202ENST00000378839 PLOD1Q02809 727 aaPredicted RBP13.13□□□□□ -0.31
CCDC3-202ENST00000378839 EFL1Q7Z2Z2 1120 aaKnown RBP13.13□□□□□ -0.31
CCDC3-202ENST00000378839 VRK3Q8IV63 474 aa13.13□□□□□ -0.31
CCDC3-202ENST00000378839 KRTCAP2Q8N6L1 136 aa13.13□□□□□ -0.31
CCDC3-202ENST00000378839 TRPV3Q8NET8 790 aa13.13□□□□□ -0.31
CCDC3-202ENST00000378839 OR2AP1Q8NGE2 309 aa13.13□□□□□ -0.31
CCDC3-202ENST00000378839 SLC22A17Q8WUG5 538 aa13.13□□□□□ -0.31
CCDC3-202ENST00000378839 PHF12Q96QT6 1004 aa13.13□□□□□ -0.31
CCDC3-202ENST00000378839 RIC8BQ9NVN3 520 aa13.13□□□□□ -0.31
CCDC3-202ENST00000378839 SLCO3A1Q9UIG8 710 aa13.13□□□□□ -0.31
CCDC3-202ENST00000378839 TMCO1Q9UM00 188 aa13.13□□□□□ -0.31
CCDC3-202ENST00000378839 RAD51BO15315 384 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 HNRNPRO43390 633 aaKnown RBP13.12□□□□□ -0.31
CCDC3-202ENST00000378839 B3GALT4O96024 378 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 CSNK1DP48730 415 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 SLC7A9P82251 487 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 ATP6AP1Q15904 470 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 SGO1Q5FBB7 561 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 SUSD1Q6UWL2 747 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 MSRB3Q8IXL7 192 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 DTWD1Q8N5C7 304 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 DPP10Q8N608 796 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 ZFAND2BQ8WV99 257 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 ACDQ96AP0 544 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 MTFMTQ96DP5 389 aaKnown RBP13.12□□□□□ -0.31
CCDC3-202ENST00000378839 ANKRD60Q9BZ19 345 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 VAPAQ9P0L0 249 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 CRLS1Q9UJA2 301 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 ATP11BQ9Y2G3 1177 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 TYW5A2RUC4 315 aaKnown RBP13.12□□□□□ -0.31
CCDC3-202ENST00000378839 GIPC1O14908 333 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 DFNA5O60443 496 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 ACRP10323 421 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 CSF2RAP15509 400 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 ITGALP20701 1170 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 SPAM1P38567 509 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 NAA20P61599 178 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 PRKG2Q13237 762 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 TMEM25Q86YD3 366 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 HID1Q8IV36 788 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 C10orf111Q8N326 155 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 CPXM2Q8N436 756 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 FAM86B1Q8N7N1 296 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 CHST14Q8NCH0 376 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 ECHDC3Q96DC8 303 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 BEGAINQ9BUH8 593 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 FAM126AQ9BYI3 521 aaPredicted RBP13.12□□□□□ -0.31
CCDC3-202ENST00000378839 ATP13A3Q9H7F0 1226 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 WBP1LQ9NX94 342 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 ZNHIT2Q9UHR6 403 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 CD84Q9UIB8 345 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 TNPO3Q9Y5L0 923 aaKnown RBP13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms