RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 STARD8Q92502 1023 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 AP2M1Q96CW1 435 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 DYNLL2Q96FJ2 89 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 HPDLQ96IR7 371 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 PUS3Q9BZE2 481 aaKnown RBP4.59□□□□□ -1.68
SCN1A-202ENST00000375405 SMURF2Q9HAU4 748 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 TCF7L1Q9HCS4 588 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 ZSWIM5Q9P217 1185 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 OPTCQ9UBM4 332 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 TBX20Q9UMR3 447 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 AK6Q9Y3D8 172 aaKnown RBP4.59□□□□□ -1.68
SCN1A-202ENST00000375405 PCDHGB1Q9Y5G3 927 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 RPS6KL1Q9Y6S9 549 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 KDM5AP29375 1690 aaKnown RBP4.58□□□□□ -1.68
SCN1A-202ENST00000375405 PFASO15067 1338 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 KLRG2A4D1S0 409 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-202ENST00000375405 RIIAD1A6NNX1 92 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 B4DGG1 531 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 CLOCKO15516 846 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 NRP2O60462 931 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 CD3GP09693 182 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF17P17021 662 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 ANXA7P20073 488 aaKnown RBP4.58□□□□□ -1.68
SCN1A-202ENST00000375405 SLC1A3P43003 542 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 SLC1A1P43005 524 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 LGALS4P56470 323 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 CDC42P60953 191 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 TLE3Q04726 772 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 MERTKQ12866 999 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 FGL2Q14314 439 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF280DQ6N043 979 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 UNQ6126/PRO20091Q6UXV3 157 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 SYDE1Q6ZW31 735 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-202ENST00000375405 METTL16Q86W50 562 aaKnown RBP4.58□□□□□ -1.68
SCN1A-202ENST00000375405 FAM126BQ8IXS8 530 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 DENND1AQ8TEH3 1009 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 CLP1Q92989 425 aaKnown RBP4.58□□□□□ -1.68
SCN1A-202ENST00000375405 CCDC126Q96EE4 140 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 BEX2Q9BXY8 128 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 UGT2B28Q9BY64 529 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 PDGFDQ9GZP0 370 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-202ENST00000375405 C12orf65Q9H3J6 166 aaKnown RBP4.58□□□□□ -1.68
SCN1A-202ENST00000375405 DENND2DQ9H6A0 471 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-202ENST00000375405 STAU2Q9NUL3 570 aaKnown RBP eCLIP4.58□□□□□ -1.68
SCN1A-202ENST00000375405 SDK2Q58EX2 2172 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 A0A1W2PPL8 197 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 NEURL1BA8MQ27 555 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 PRSS44E7EML9 344 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 SCDO00767 359 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 NKRFO15226 690 aaKnown RBP eCLIP4.58□□□□□ -1.68
SCN1A-202ENST00000375405 DHFRP00374 187 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 RENP00797 406 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 CETPP11597 493 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 ABOP16442 354 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 MAGP20916 626 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 CXCR1P25024 350 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 KLRC1P26715 233 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 GEMP55040 296 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 IFI35P80217 286 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-202ENST00000375405 GRAPQ13588 217 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 BLMHQ13867 455 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 NRF1Q16656 503 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 PABPC1LQ4VXU2 614 aaKnown RBP4.58□□□□□ -1.68
SCN1A-202ENST00000375405 CRTC1Q6UUV9 634 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 SPATC1Q76KD6 591 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 IQCHQ86VS3 1027 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 PPIL6Q8IXY8 311 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 MITD1Q8WV92 249 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 SELENOMQ8WWX9 145 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 SORCS1Q8WY21 1168 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 DNAJA3Q96EY1 480 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 MARK4Q96L34 752 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF75AQ96N20 296 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 OR51V1Q9H2C8 321 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 PPP4R1LQ9P1A2 415 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 COMMD3Q9UBI1 195 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 MTRRQ9UBK8 725 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 SNX12Q9UMY4 172 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 COMMD3-BMI1R4GMX3 469 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 THOC2Q8NI27 1593 aaKnown RBP4.58□□□□□ -1.68
SCN1A-202ENST00000375405 SYCP2Q9BX26 1530 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 TMEM150CB9EJG8 249 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 USP17L15C9J2P7 530 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 USP17L13C9JLJ4 530 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 USP17L11C9JVI0 530 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 USP17L18D6R9N7 530 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 USP17L22D6RA61 530 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 USP17L17D6RBQ6 530 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 USP17L19D6RCP7 530 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 USP17L20D6RJB6 530 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF780AO75290 641 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-202ENST00000375405 LAMP2P13473 410 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 EDN3P14138 238 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 S100A4P26447 101 aaKnown RBP4.58□□□□□ -1.68
SCN1A-202ENST00000375405 ERVK-16P61578 105 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 RPP30P78346 268 aaKnown RBP4.58□□□□□ -1.68
SCN1A-202ENST00000375405 PPP3CAQ08209 521 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 USP17L24Q0WX57 530 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 ARL6IP1Q15041 203 aa4.58□□□□□ -1.68
SCN1A-202ENST00000375405 SLC9A9Q8IVB4 645 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms