RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 ZPBP2Q6X784 338 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 ZNF574Q6ZN55 896 aaPredicted RBP12.45□□□□□ -0.42
COL6A3-203ENST00000353578 GTF2IRD2Q86UP8 949 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 CHPT1Q8WUD6 406 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 ASB7Q9H672 318 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 CA5BQ9Y2D0 317 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 AP1M2Q9Y6Q5 423 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 MYPNQ86TC9 1320 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.45□□□□□ -0.42
COL6A3-203ENST00000353578 RAB3BP20337 219 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 LARS2Q15031 903 aaKnown RBP12.45□□□□□ -0.42
COL6A3-203ENST00000353578 CCBE1Q6UXH8 406 aaPredicted RBP12.45□□□□□ -0.42
COL6A3-203ENST00000353578 KBTBD6Q86V97 674 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 CARM1Q86X55 608 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 TMEM139Q8IV31 216 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 CNPPD1Q9BV87 410 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 TCF7L1Q9HCS4 588 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 PCDHGA4Q9Y5G9 962 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 CERCAMQ5T4B2 595 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 PET117Q6UWS5 81 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 SLC22A15Q8IZD6 547 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 NKIRAS2Q9NYR9 191 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 COL15A1P39059 1388 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 LRRC14BA6NHZ5 514 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 RAMP2O60895 175 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 ZDHHC11BP0C7U3 371 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 RPS5P46782 204 aaKnown RBP12.45□□□□□ -0.42
COL6A3-203ENST00000353578 RAB8AP61006 207 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 NCEH1Q6PIU2 408 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 PAPD4Q6PIY7 484 aaKnown RBP12.45□□□□□ -0.42
COL6A3-203ENST00000353578 PNLDC1Q8NA58 520 aaKnown RBP12.45□□□□□ -0.42
COL6A3-203ENST00000353578 GMCL1P1Q8NEA9 526 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 SNX33Q8WV41 574 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 PPP1R16AQ96I34 528 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 CCDC3Q9BQI4 270 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 NT5MQ9NPB1 228 aa12.45□□□□□ -0.42
COL6A3-203ENST00000353578 PAK1IP1Q9NWT1 392 aaPredicted RBP12.45□□□□□ -0.42
COL6A3-203ENST00000353578 NUDT1P36639 197 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 VEGFCP49767 419 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 PDIA6Q15084 440 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 SLC26A9Q7LBE3 791 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 RELL1Q8IUW5 271 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 HID1Q8IV36 788 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 DEDD2Q8WXF8 326 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 ZNF512Q96ME7 567 aaPredicted RBP12.44□□□□□ -0.42
COL6A3-203ENST00000353578 SEMA4BQ9NPR2 832 aaPredicted RBP12.44□□□□□ -0.42
COL6A3-203ENST00000353578 TSR3Q9UJK0 312 aaKnown RBP12.44□□□□□ -0.42
COL6A3-203ENST00000353578 HLCSP50747 726 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 VAMP2P63027 116 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 GK2Q14410 553 aaPredicted RBP12.44□□□□□ -0.42
COL6A3-203ENST00000353578 CXorf57Q6NSI4 855 aaKnown RBP12.44□□□□□ -0.42
COL6A3-203ENST00000353578 PAQR7Q86WK9 346 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 C16orf58Q96GQ5 468 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 CHST7Q9NS84 486 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 CRB1P82279 1406 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 OR1I1O60431 355 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 NDUFB10O96000 172 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 JAZF1Q86VZ6 243 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 TRIM48Q8IWZ4 208 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 TSEN15Q8WW01 171 aaKnown RBP12.44□□□□□ -0.42
COL6A3-203ENST00000353578 UCK2Q9BZX2 261 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 BTBD1Q9H0C5 482 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 NELFAQ9H3P2 528 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.44□□□□□ -0.42
COL6A3-203ENST00000353578 SRRDQ9UH36 339 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 TO15178 435 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 HBP1O60381 514 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 RFPL3O75679 317 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 PRKAR1BP31321 381 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 DLSTP36957 453 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 CLK3P49761 638 aaKnown RBP12.44□□□□□ -0.42
COL6A3-203ENST00000353578 TLE3Q04726 772 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 PPP2R2DQ66LE6 453 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 NLGN1Q8N2Q7 840 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 C12orf45Q8N5I9 185 aaPredicted RBP12.44□□□□□ -0.42
COL6A3-203ENST00000353578 AGAP2Q99490 1192 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 C1QTNF7Q9BXJ2 289 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 RBM22Q9NW64 420 aaKnown RBP eCLIP12.44□□□□□ -0.42
COL6A3-203ENST00000353578 C9IYK1 514 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 YKT6O15498 198 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 XPNPEP2O43895 674 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 OR2T5Q6IEZ7 315 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 OR2T29Q8NH02 315 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 DCPSQ96C86 337 aaKnown RBP12.44□□□□□ -0.42
COL6A3-203ENST00000353578 SGCEO43556 437 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 TPH1P17752 444 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 RAB3AP20336 220 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 TCF7P36402 384 aaPredicted RBP12.44□□□□□ -0.42
COL6A3-203ENST00000353578 RPL38P63173 70 aaKnown RBP12.44□□□□□ -0.42
COL6A3-203ENST00000353578 ATP6AP1Q15904 470 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 MPZL3Q6UWV2 235 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 PIAS4Q8N2W9 510 aaPredicted RBP12.44□□□□□ -0.42
COL6A3-203ENST00000353578 TAAR8Q969N4 342 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 LENG8Q96PV6 779 aaPredicted RBP12.44□□□□□ -0.42
COL6A3-203ENST00000353578 PSKH2Q96QS6 385 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 RNF32Q9H0A6 362 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 TAS2R10Q9NYW0 307 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 ZNF282Q9UDV7 671 aaPredicted RBP12.44□□□□□ -0.42
COL6A3-203ENST00000353578 OAZ3Q9UMX2 235 aa12.44□□□□□ -0.42
COL6A3-203ENST00000353578 F5H6K3 240 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms