RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 GRXCR2A6NFK2 248 aa21.4■■□□□ 1.02
SHMT1-202ENST00000352886 ACOX3O15254 700 aa21.4■■□□□ 1.02
SHMT1-202ENST00000352886 PARNO95453 639 aaKnown RBP21.4■■□□□ 1.02
SHMT1-202ENST00000352886 IGSF6O95976 241 aa21.4■■□□□ 1.02
SHMT1-202ENST00000352886 MT-ND1P03886 318 aa21.4■■□□□ 1.02
SHMT1-202ENST00000352886 UMPSP11172 480 aa21.4■■□□□ 1.02
SHMT1-202ENST00000352886 SLC2A4P14672 509 aa21.4■■□□□ 1.02
SHMT1-202ENST00000352886 CD70P32970 193 aa21.4■■□□□ 1.02
SHMT1-202ENST00000352886 SH3BGRP55822 239 aaPredicted RBP21.4■■□□□ 1.02
SHMT1-202ENST00000352886 MTPNP58546 118 aa21.4■■□□□ 1.02
SHMT1-202ENST00000352886 RPL38P63173 70 aaKnown RBP21.4■■□□□ 1.02
SHMT1-202ENST00000352886 PLIN5Q00G26 463 aa21.4■■□□□ 1.02
SHMT1-202ENST00000352886 DGKKQ5KSL6 1271 aa21.4■■□□□ 1.02
SHMT1-202ENST00000352886 TMTC4Q5T4D3 741 aa21.4■■□□□ 1.02
SHMT1-202ENST00000352886 LYPLAL1Q5VWZ2 237 aa21.4■■□□□ 1.02
SHMT1-202ENST00000352886 ITIH5Q86UX2 942 aa21.4■■□□□ 1.02
SHMT1-202ENST00000352886 PROSER1Q86XN7 944 aa21.4■■□□□ 1.02
SHMT1-202ENST00000352886 FIBCD1Q8N539 461 aa21.4■■□□□ 1.02
SHMT1-202ENST00000352886 MPP4Q96JB8 637 aa21.4■■□□□ 1.02
SHMT1-202ENST00000352886 HTATIP2Q9BUP3 242 aa21.4■■□□□ 1.02
SHMT1-202ENST00000352886 CD244Q9BZW8 370 aa21.4■■□□□ 1.02
SHMT1-202ENST00000352886 CFAP97Q9P2B7 532 aa21.4■■□□□ 1.02
SHMT1-202ENST00000352886 NPIPB15A6NHN6 443 aaPredicted RBP21.39■■□□□ 1.02
SHMT1-202ENST00000352886 ZNF23P17027 643 aa21.39■■□□□ 1.02
SHMT1-202ENST00000352886 CSNK1DP48730 415 aa21.39■■□□□ 1.02
SHMT1-202ENST00000352886 MERTKQ12866 999 aa21.39■■□□□ 1.02
SHMT1-202ENST00000352886 SELPLGQ14242 412 aa21.39■■□□□ 1.02
SHMT1-202ENST00000352886 FXNQ16595 210 aa21.39■■□□□ 1.02
SHMT1-202ENST00000352886 MACC1Q6ZN28 852 aa21.39■■□□□ 1.02
SHMT1-202ENST00000352886 GAREM2Q75VX8 874 aa21.39■■□□□ 1.02
SHMT1-202ENST00000352886 SPRED1Q7Z699 444 aa21.39■■□□□ 1.02
SHMT1-202ENST00000352886 PAPD5Q8NDF8 572 aaKnown RBP21.39■■□□□ 1.02
SHMT1-202ENST00000352886 BIRC7Q96CA5 298 aa21.39■■□□□ 1.02
SHMT1-202ENST00000352886 RHBDF1Q96CC6 855 aa21.39■■□□□ 1.02
SHMT1-202ENST00000352886 PPP3R2Q96LZ3 170 aa21.39■■□□□ 1.02
SHMT1-202ENST00000352886 C19orf43Q9BQ61 176 aa21.39■■□□□ 1.02
SHMT1-202ENST00000352886 LATS2Q9NRM7 1088 aa21.39■■□□□ 1.02
SHMT1-202ENST00000352886 SH3BP1Q9Y3L3 701 aa21.39■■□□□ 1.02
SHMT1-202ENST00000352886 ARNTLO00327 626 aa21.39■■□□□ 1.01
SHMT1-202ENST00000352886 RASAL1O95294 804 aa21.39■■□□□ 1.01
SHMT1-202ENST00000352886 JAK1P23458 1154 aa21.39■■□□□ 1.01
SHMT1-202ENST00000352886 SERPINA4P29622 427 aa21.39■■□□□ 1.01
SHMT1-202ENST00000352886 MAP7Q14244 749 aa21.39■■□□□ 1.01
SHMT1-202ENST00000352886 SULT1C3Q6IMI6 304 aa21.39■■□□□ 1.01
SHMT1-202ENST00000352886 B3GNT6Q6ZMB0 384 aa21.39■■□□□ 1.01
SHMT1-202ENST00000352886 TBC1D21Q8IYX1 336 aa21.39■■□□□ 1.01
SHMT1-202ENST00000352886 ADGRG2Q8IZP9 1017 aa21.39■■□□□ 1.01
SHMT1-202ENST00000352886 NXPE1Q8N323 547 aa21.39■■□□□ 1.01
SHMT1-202ENST00000352886 ZNF296Q8WUU4 475 aaPredicted RBP21.39■■□□□ 1.01
SHMT1-202ENST00000352886 FARSBQ9NSD9 589 aaKnown RBP21.39■■□□□ 1.01
SHMT1-202ENST00000352886 KIAA1522Q9P206 1035 aaPredicted RBP21.39■■□□□ 1.01
SHMT1-202ENST00000352886 EI24O14681 340 aa21.38■■□□□ 1.01
SHMT1-202ENST00000352886 MSH3P20585 1137 aa21.38■■□□□ 1.01
SHMT1-202ENST00000352886 VARSP26640 1264 aaKnown RBP21.38■■□□□ 1.01
SHMT1-202ENST00000352886 RPL10P27635 214 aaKnown RBP21.38■■□□□ 1.01
SHMT1-202ENST00000352886 PTGR1Q14914 329 aa21.38■■□□□ 1.01
SHMT1-202ENST00000352886 PLEKHG6Q3KR16 790 aa21.38■■□□□ 1.01
SHMT1-202ENST00000352886 GPR33Q49SQ1 333 aa21.38■■□□□ 1.01
SHMT1-202ENST00000352886 GLYATQ6IB77 296 aa21.38■■□□□ 1.01
SHMT1-202ENST00000352886 GRAMD4Q6IC98 578 aa21.38■■□□□ 1.01
SHMT1-202ENST00000352886 CHCHD4Q8N4Q1 142 aa21.38■■□□□ 1.01
SHMT1-202ENST00000352886 GPR26Q8NDV2 337 aa21.38■■□□□ 1.01
SHMT1-202ENST00000352886 OR2AP1Q8NGE2 309 aa21.38■■□□□ 1.01
SHMT1-202ENST00000352886 CGREF1Q99674 301 aa21.38■■□□□ 1.01
SHMT1-202ENST00000352886 CLK4Q9HAZ1 481 aaKnown RBP21.38■■□□□ 1.01
SHMT1-202ENST00000352886 ABCB8Q9NUT2 735 aa21.38■■□□□ 1.01
SHMT1-202ENST00000352886 KLQ9UEF7 1012 aa21.38■■□□□ 1.01
SHMT1-202ENST00000352886 INTS6Q9UL03 887 aaKnown RBP21.38■■□□□ 1.01
SHMT1-202ENST00000352886 KIAA1671Q9BY89 1806 aa21.38■■□□□ 1.01
SHMT1-202ENST00000352886 TEX28O15482 410 aa21.38■■□□□ 1.01
SHMT1-202ENST00000352886 RGS14O43566 566 aa21.38■■□□□ 1.01
SHMT1-202ENST00000352886 CNKSR3Q6P9H4 555 aa21.38■■□□□ 1.01
SHMT1-202ENST00000352886 BORAQ6PGQ7 559 aa21.38■■□□□ 1.01
SHMT1-202ENST00000352886 MBOAT1Q6ZNC8 495 aa21.38■■□□□ 1.01
SHMT1-202ENST00000352886 PRR23BQ6ZRT6 265 aa21.38■■□□□ 1.01
SHMT1-202ENST00000352886 NSMCE2Q96MF7 247 aa21.38■■□□□ 1.01
SHMT1-202ENST00000352886 MAGEL2Q9UJ55 1249 aa21.38■■□□□ 1.01
SHMT1-202ENST00000352886 PCDHB3Q9Y5E6 796 aa21.38■■□□□ 1.01
SHMT1-202ENST00000352886 MKI67P46013 3256 aaKnown RBP21.38■■□□□ 1.01
SHMT1-202ENST00000352886 H3BSA7 217 aa21.37■■□□□ 1.01
SHMT1-202ENST00000352886 IFRD1O00458 451 aaPredicted RBP21.37■■□□□ 1.01
SHMT1-202ENST00000352886 BNIP3LO60238 219 aa21.37■■□□□ 1.01
SHMT1-202ENST00000352886 STK19P49842 368 aaPredicted RBP21.37■■□□□ 1.01
SHMT1-202ENST00000352886 HMGCS1Q01581 520 aa21.37■■□□□ 1.01
SHMT1-202ENST00000352886 MPPE1Q53F39 396 aa21.37■■□□□ 1.01
SHMT1-202ENST00000352886 ANKRD33Q7Z3H0 272 aa21.37■■□□□ 1.01
SHMT1-202ENST00000352886 MRPS31Q92665 395 aaKnown RBP21.37■■□□□ 1.01
SHMT1-202ENST00000352886 SPG21Q9NZD8 308 aa21.37■■□□□ 1.01
SHMT1-202ENST00000352886 SLC8A2Q9UPR5 921 aa21.37■■□□□ 1.01
SHMT1-202ENST00000352886 PLXNB3Q9ULL4 1909 aa21.37■■□□□ 1.01
SHMT1-202ENST00000352886 K7EPI3 171 aa21.37■■□□□ 1.01
SHMT1-202ENST00000352886 MYF6P23409 242 aa21.37■■□□□ 1.01
SHMT1-202ENST00000352886 CTSOP43234 321 aaPredicted RBP21.37■■□□□ 1.01
SHMT1-202ENST00000352886 CDH15P55291 814 aa21.37■■□□□ 1.01
SHMT1-202ENST00000352886 PWP1Q13610 501 aa21.37■■□□□ 1.01
SHMT1-202ENST00000352886 KIAA0040Q15053 153 aa21.37■■□□□ 1.01
SHMT1-202ENST00000352886 SLC36A3Q495N2 470 aa21.37■■□□□ 1.01
SHMT1-202ENST00000352886 CRTC1Q6UUV9 634 aa21.37■■□□□ 1.01
SHMT1-202ENST00000352886 HTR3DQ70Z44 454 aa21.37■■□□□ 1.01
SHMT1-202ENST00000352886 DDX53Q86TM3 631 aaKnown RBP21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms