RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 VPS50Q96JG6 964 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 RNF145Q96MT1 663 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 RC3H2Q9HBD1 1191 aaKnown RBP10.16□□□□□ -0.78
LIMA1-201ENST00000341247 ARL15Q9NXU5 204 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 ABCD2Q9UBJ2 740 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 OGDHLQ9ULD0 1010 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 TRAV19A0A0A6YYK7 116 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 A0A1W2PQ67 120 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 HTRA2O43464 458 aaPredicted RBP10.16□□□□□ -0.78
LIMA1-201ENST00000341247 SEC22BO75396 215 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 B3GALT4O96024 378 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 OTCP00480 354 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 LAG3P18627 525 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 NFKBIAP25963 317 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 PPP3CCP48454 512 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 WDR5P61964 334 aaKnown RBP10.16□□□□□ -0.78
LIMA1-201ENST00000341247 MPPE1Q53F39 396 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 OTUD3Q5T2D3 398 aaPredicted RBP10.16□□□□□ -0.78
LIMA1-201ENST00000341247 SERPINA13PQ6UXR4 307 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 ERMP1Q7Z2K6 904 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 NXPE1Q8N323 547 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 RNF175Q8N4F7 328 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 CYB5D2Q8WUJ1 264 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 ACDQ96AP0 544 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 CEP295NLQ96MC4 621 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 FAM192AQ9GZU8 254 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 ACTL8Q9H568 366 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 RETREG1Q9H6L5 497 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 RPF2Q9H7B2 306 aaKnown RBP10.16□□□□□ -0.78
LIMA1-201ENST00000341247 ZNF490Q9ULM2 529 aaPredicted RBP10.16□□□□□ -0.78
LIMA1-201ENST00000341247 CROCCQ5TZA2 2017 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 KANSL1LA0AUZ9 987 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 LSM1O15116 133 aaKnown RBP10.15□□□□□ -0.78
LIMA1-201ENST00000341247 TNFAIP8O95379 198 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 FASP25445 335 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 PPP1R8Q12972 351 aaKnown RBP10.15□□□□□ -0.78
LIMA1-201ENST00000341247 CBX2Q14781 532 aaPredicted RBP10.15□□□□□ -0.78
LIMA1-201ENST00000341247 SLC5A9Q2M3M2 681 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 PLPP4Q5VZY2 271 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 PRMT9Q6P2P2 845 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 EFL1Q7Z2Z2 1120 aaKnown RBP10.15□□□□□ -0.78
LIMA1-201ENST00000341247 EPHX4Q8IUS5 362 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 ZNF689Q96CS4 500 aaPredicted RBP10.15□□□□□ -0.78
LIMA1-201ENST00000341247 BBS2Q9BXC9 721 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 C1QTNF3Q9BXJ4 246 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 ATG10Q9H0Y0 220 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 CCM2LQ9NUG4 571 aaPredicted RBP10.15□□□□□ -0.78
LIMA1-201ENST00000341247 TBX21Q9UL17 535 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.15□□□□□ -0.78
LIMA1-201ENST00000341247 DFNA5O60443 496 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 LRATO95237 230 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 LINC00271P0C7V0 271 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 ITPKAP23677 461 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 SNRPD1P62314 119 aaKnown RBP10.15□□□□□ -0.78
LIMA1-201ENST00000341247 NTHL1P78549 312 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 PTSQ03393 145 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 MYLK3Q32MK0 819 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 FAM174BQ3ZCQ3 159 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 GTDC1Q4AE62 458 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 ANKRD46Q86W74 232 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 VRK3Q8IV63 474 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 ADGRG5Q8IZF4 528 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 OFCC1Q8IZS5 231 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 KLHL23Q8NBE8 558 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 KREMEN2Q8NCW0 462 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 FIG4Q92562 907 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 FOXJ1Q92949 421 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 THUMPD3Q9BV44 507 aaKnown RBP10.15□□□□□ -0.78
LIMA1-201ENST00000341247 TRIM15Q9C019 465 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 SUV39H2Q9H5I1 410 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 ACTR8Q9H981 624 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 PFDN4Q9NQP4 134 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 ACTR3BQ9P1U1 418 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 NIPSNAP3AQ9UFN0 247 aaPredicted RBP10.15□□□□□ -0.78
LIMA1-201ENST00000341247 TNPO3Q9Y5L0 923 aaKnown RBP10.15□□□□□ -0.78
LIMA1-201ENST00000341247 HCFC2Q9Y5Z7 792 aa10.15□□□□□ -0.78
LIMA1-201ENST00000341247 FAM234BA2RU67 622 aa10.15□□□□□ -0.79
LIMA1-201ENST00000341247 OR2AG2A6NM03 316 aa10.15□□□□□ -0.79
LIMA1-201ENST00000341247 HIDE1A8MVS5 230 aa10.15□□□□□ -0.79
LIMA1-201ENST00000341247 ULK1O75385 1050 aa10.15□□□□□ -0.79
LIMA1-201ENST00000341247 EEDO75530 441 aaKnown RBP10.15□□□□□ -0.79
LIMA1-201ENST00000341247 GSNP06396 782 aa10.15□□□□□ -0.79
LIMA1-201ENST00000341247 HSD17B1P14061 328 aa10.15□□□□□ -0.79
LIMA1-201ENST00000341247 CCR7P32248 378 aa10.15□□□□□ -0.79
LIMA1-201ENST00000341247 RPIAP49247 311 aa10.15□□□□□ -0.79
LIMA1-201ENST00000341247 ADARP55265 1226 aaKnown RBP10.15□□□□□ -0.79
LIMA1-201ENST00000341247 PCBP2Q15366 365 aaKnown RBP eCLIP10.15□□□□□ -0.79
LIMA1-201ENST00000341247 CDKN3Q16667 212 aa10.15□□□□□ -0.79
LIMA1-201ENST00000341247 GPRC6AQ5T6X5 926 aa10.15□□□□□ -0.79
LIMA1-201ENST00000341247 C22orf39Q6P5X5 142 aa10.15□□□□□ -0.79
LIMA1-201ENST00000341247 LIX1Q8N485 282 aa10.15□□□□□ -0.79
LIMA1-201ENST00000341247 OR10Q1Q8NGQ4 319 aa10.15□□□□□ -0.79
LIMA1-201ENST00000341247 CDC26Q8NHZ8 85 aa10.15□□□□□ -0.79
LIMA1-201ENST00000341247 RHBDF1Q96CC6 855 aa10.15□□□□□ -0.79
LIMA1-201ENST00000341247 COPS8Q99627 209 aa10.15□□□□□ -0.79
LIMA1-201ENST00000341247 BRINP2Q9C0B6 783 aa10.15□□□□□ -0.79
LIMA1-201ENST00000341247 B4GALT6Q9UBX8 382 aa10.15□□□□□ -0.79
LIMA1-201ENST00000341247 PTBP2Q9UKA9 531 aaKnown RBP10.15□□□□□ -0.79
LIMA1-201ENST00000341247 MAGED1Q9Y5V3 778 aaPredicted RBP10.15□□□□□ -0.79
LIMA1-201ENST00000341247 EI24O14681 340 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms