RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 SIGIRRQ6IA17 410 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 CATSPERGQ6ZRH7 1159 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 FAM126BQ8IXS8 530 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 CADM2Q8N3J6 435 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 ATPAF2Q8N5M1 289 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 CDYL2Q8N8U2 506 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 TSPAN17Q96FV3 270 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 TBATAQ96M53 351 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 AGAP4Q96P64 663 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 FCRL5Q96RD9 977 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 KAT8Q9H7Z6 458 aaKnown RBP13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 ERVK13-1Q9NX77 482 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 TSR3Q9UJK0 312 aaKnown RBP13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 C3orf18Q9UK00 162 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 FAM50BQ9Y247 325 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 PKP3Q9Y446 797 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 ZSCAN5BA6NJL1 495 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 DSCR3O14972 297 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 ANXA9O76027 345 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 TPPPO94811 219 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 HPRP00739 348 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 CCDC159P0C7I6 412 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 NPR3P17342 541 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 GADD45AP24522 165 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 OAZ1P54368 228 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 GTDC1Q4AE62 458 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 FBXO47Q5MNV8 452 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 C6orf136Q5SQH8 315 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 TTC23LQ6PF05 361 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 C10orf111Q8N326 155 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 OR2T12Q8NG77 320 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 DEPDC7Q96QD5 511 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 CITED4Q96RK1 184 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 NXF3Q9H4D5 531 aaKnown RBP13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 MRM3Q9HC36 420 aaKnown RBP13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 NEUROG3Q9Y4Z2 214 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 A0A096LPI6 279 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 ISPDA4D126 451 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 CACNG3O60359 315 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 MAFKO60675 156 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 WISP3O95389 354 aaPredicted RBP13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 C21orf33P30042 268 aaPredicted RBP13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 GRK3P35626 688 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 SEMA3AQ14563 771 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 ZNF181Q2M3W8 571 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 DCAF15Q66K64 600 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 RAB44Q7Z6P3 723 aaPredicted RBP13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 ARHGAP12Q8IWW6 846 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 NCLNQ969V3 563 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 FAM162AQ96A26 154 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 OR2B2Q9GZK3 357 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 IRF2BPLQ9H1B7 796 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 DUSP21Q9H596 190 aa13.24□□□□□ -0.29
CCDC88C-201ENST00000331194 METTL15A6NJ78 407 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 CDC7O00311 574 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 ICMTO60725 284 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 FAM20BO75063 409 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 CYP7B1O75881 506 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 LCP2Q13094 533 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 TP53BP2Q13625 1128 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 TSNQ15631 228 aaKnown RBP13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 SLC14A2Q15849 920 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 FXNQ16595 210 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 BCL7AQ4VC05 210 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 RAP1GAP2Q684P5 730 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 CEP68Q76N32 757 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 DPP9Q86TI2 863 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 GALNT12Q8IXK2 581 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 REXO5Q96IC2 774 aaKnown RBP13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 ATOH8Q96SQ7 321 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 ACTL8Q9H568 366 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 RUBCNLQ9H714 662 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 PCDHGB1Q9Y5G3 927 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 MCM3APO60318 1980 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 AIREO43918 545 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 OR4F21O95013 312 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 HTR6P50406 440 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 SOX4Q06945 474 aaPredicted RBP13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 PRKG2Q13237 762 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 RBBP7Q16576 425 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 SPERTQ8NA61 448 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 APPL2Q8NEU8 664 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 CDCA5Q96FF9 252 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 Q96MT0 163 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 KLHL5Q96PQ7 755 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 TMEM209Q96SK2 561 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 CDADC1Q9BWV3 514 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 PRRG3Q9BZD7 231 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 ENTPD7Q9NQZ7 604 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 CPA4Q9UI42 421 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 TIMM13Q9Y5L4 95 aaPredicted RBP13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 PHIPQ8WWQ0 1821 aa13.23□□□□□ -0.29
CCDC88C-201ENST00000331194 FAM234BA2RU67 622 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 CENPBD1B2RD01 187 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 ERVH48-1M5A8F1 160 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 ALX3O95076 343 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 NTRK1P04629 796 aa13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 ABCB1P08183 1280 aaPredicted RBP13.22□□□□□ -0.29
CCDC88C-201ENST00000331194 PRR35P0CG20 571 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms