RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 ZNF567Q8N184 647 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 C9orf43Q8TAL5 461 aaPredicted RBP11.35□□□□□ -0.59
VPS39-201ENST00000318006 HEXDCQ8WVB3 486 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 NSMCE3Q96MG7 304 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 CCDC115Q96NT0 180 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 INTS7Q9NVH2 962 aaKnown RBP11.35□□□□□ -0.59
VPS39-201ENST00000318006 MAP10Q9P2G4 905 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 NUP50Q9UKX7 468 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 ZNF490Q9ULM2 529 aaPredicted RBP11.35□□□□□ -0.59
VPS39-201ENST00000318006 NPEPPSL1A6NEC2 478 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 GNB5O14775 395 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 PIP5K1BO14986 540 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 CCNYL3P0C7X3 344 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 NDUFV1P49821 464 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 GDF10P55107 478 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 SMCO1Q147U7 214 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 SYT16Q17RD7 645 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 ERMP1Q7Z2K6 904 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 TMEM192Q8IY95 271 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 NAT8LQ8N9F0 302 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 GMLQ99445 158 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 FAIM2Q9BWQ8 316 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 LRRC3Q9BY71 257 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 UCKL1Q9NWZ5 548 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 POLR1DQ9Y2S0 133 aa11.35□□□□□ -0.59
VPS39-201ENST00000318006 MRPS23Q9Y3D9 190 aaKnown RBP11.35□□□□□ -0.59
VPS39-201ENST00000318006 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.34□□□□□ -0.59
VPS39-201ENST00000318006 MID1O15344 667 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 CTPS1P17812 591 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 CXCR2P25025 360 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 SLC6A4P31645 630 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 MC4RP32245 332 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 MNDAP41218 407 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 SLC9A3P48764 834 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 MAB21L1Q13394 359 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 ZNF404Q494X3 552 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 TMEM198Q66K66 360 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 TAC4Q86UU9 113 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 CPNE8Q86YQ8 564 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 MARVELD2Q8N4S9 558 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 BIRC8Q96P09 236 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 DEFB118Q96PH6 123 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 KCNN2Q9H2S1 579 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 A6NHS1 94 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 TRBC1P01850 177 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 BUD31P41223 144 aaPredicted RBP11.34□□□□□ -0.59
VPS39-201ENST00000318006 GLUD2P49448 558 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 SLITRK4Q8IW52 837 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 PPCDCQ96CD2 204 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 NUSAP1Q9BXS6 441 aaKnown RBP11.34□□□□□ -0.59
VPS39-201ENST00000318006 ARPC2O15144 300 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 ABCB7O75027 752 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 TFPTP0C1Z6 253 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 TNNI3P19429 210 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 GABRR2P28476 465 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 CTNNB1P35222 781 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 HOXD13P35453 343 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 CLCN2P51788 898 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 BIKQ13323 160 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 RD3Q7Z3Z2 195 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 UBE2Q1Q7Z7E8 422 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 ZC3H10Q96K80 434 aaKnown RBP11.34□□□□□ -0.59
VPS39-201ENST00000318006 APOLD1Q96LR9 279 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 SLC35C2Q9NQQ7 365 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 RGS17Q9UGC6 210 aaPredicted RBP11.34□□□□□ -0.59
VPS39-201ENST00000318006 LRP6O75581 1613 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.34□□□□□ -0.59
VPS39-201ENST00000318006 TMEM88BA6NKF7 163 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 QSOX1O00391 747 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 FPGTO14772 594 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 HLA-DQA2P01906 255 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 IFNW1P05000 195 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 MTHFD1P11586 935 aaKnown RBP11.34□□□□□ -0.59
VPS39-201ENST00000318006 PCSK2P16519 638 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 ZNF182P17025 639 aaPredicted RBP11.34□□□□□ -0.59
VPS39-201ENST00000318006 TMBIM6P55061 237 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 CRTC2Q53ET0 693 aaPredicted RBP11.34□□□□□ -0.59
VPS39-201ENST00000318006 CXorf57Q6NSI4 855 aaKnown RBP11.34□□□□□ -0.59
VPS39-201ENST00000318006 DLK2Q6UY11 383 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 DET1Q7L5Y6 550 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 RBFAQ8N0V3 343 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 C11orf65Q8NCR3 313 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 TRPV3Q8NET8 790 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 ITPAQ9BY32 194 aa11.34□□□□□ -0.59
VPS39-201ENST00000318006 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.34□□□□□ -0.59
VPS39-201ENST00000318006 hCG_2039718K7EN88 272 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 RSL1D1O76021 490 aaKnown RBP11.33□□□□□ -0.6
VPS39-201ENST00000318006 KDM4BO94953 1096 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 SLC2A2P11168 524 aaPredicted RBP11.33□□□□□ -0.6
VPS39-201ENST00000318006 ITGA3P26006 1051 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 DEFA5Q01523 94 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 SOWAHAQ2M3V2 549 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 FBXO43Q4G163 708 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 SLC39A4Q6P5W5 647 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 OR52J3Q8NH60 311 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 LRRC15Q8TF66 581 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 TBATAQ96M53 351 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 OR52B2Q96RD2 323 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 COPS8Q99627 209 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 TCF25Q9BQ70 676 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms