RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 CGREF1Q99674 301 aa12.67□□□□□ -0.38
COL3A1-201ENST00000304636 SLC39A3Q9BRY0 314 aa12.67□□□□□ -0.38
COL3A1-201ENST00000304636 LOC100130705A0A1B0GUX0 176 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 A0A1W2PPW3 197 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 ACOX3O15254 700 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 INSIG1O15503 277 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 GADD45GO95257 159 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 PRAMEF1O95521 474 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 FGF3P11487 239 aaPredicted RBP12.66□□□□□ -0.38
COL3A1-201ENST00000304636 ENTPD1P49961 510 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 IQCCQ4KMZ1 466 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 TPRG1LQ5T0D9 272 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 XKR5Q6UX68 686 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 TMPRSS11BQ86T26 416 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 SLC38A4Q969I6 547 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 MAGEH1Q9H213 219 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 RHBGQ9H310 441 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 TTYH1Q9H313 450 aaPredicted RBP12.66□□□□□ -0.38
COL3A1-201ENST00000304636 PRAMEF33A0A0G2JMD5 474 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 FAM172BPA6NC97 362 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 URADA6NGE7 173 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 TMEM233B4DJY2 109 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 PRAMEF10O60809 474 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 ENO2P09104 434 aaPredicted RBP12.66□□□□□ -0.38
COL3A1-201ENST00000304636 HCAR3P49019 387 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 BEND5Q7L4P6 421 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 RD3Q7Z3Z2 195 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 TMEM110Q86TL2 294 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 OAFQ86UD1 273 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 LRRC20Q8TCA0 184 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 CLEC4CQ8WTT0 213 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 UFD1Q92890 307 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 PCED1BQ96HM7 432 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 MFSD1Q9H3U5 465 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 PAK6Q9NQU5 681 aaPredicted RBP12.66□□□□□ -0.38
COL3A1-201ENST00000304636 TMED5Q9Y3A6 229 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 RLN1P04808 185 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 YES1P07947 543 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 TMBIM6P55061 237 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 KLHL22Q53GT1 634 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 PLEKHG4Q58EX7 1191 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 FAM98AQ8NCA5 519 aaKnown RBP12.66□□□□□ -0.38
COL3A1-201ENST00000304636 SPPL2BQ8TCT7 592 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 RAD51AP1Q96B01 352 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 B3GALT6Q96L58 329 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 ACBD6Q9BR61 282 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 TRIT1Q9H3H1 467 aaKnown RBP12.66□□□□□ -0.38
COL3A1-201ENST00000304636 THG1LQ9NWX6 298 aaKnown RBP12.66□□□□□ -0.38
COL3A1-201ENST00000304636 RPL36Q9Y3U8 105 aaKnown RBP12.66□□□□□ -0.38
COL3A1-201ENST00000304636 SNX10Q9Y5X0 201 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 NR2E3Q9Y5X4 410 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 C10orf71Q711Q0 1435 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 RFPL1O75677 317 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 RSL1D1O76021 490 aaKnown RBP12.66□□□□□ -0.38
COL3A1-201ENST00000304636 PNLIPRP1P54315 467 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 TAF10Q12962 218 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 LSAMPQ13449 338 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 MYBPC3Q14896 1274 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 PPP1R13LQ8WUF5 828 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 SIGLEC10Q96LC7 697 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 MCMBPQ9BTE3 642 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 LMAN2LQ9H0V9 348 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 C11orf16Q9NQ32 467 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 KIAA1522Q9P206 1035 aaPredicted RBP12.66□□□□□ -0.38
COL3A1-201ENST00000304636 ASF1AQ9Y294 204 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 MYCLP1P12525 358 aaPredicted RBP12.66□□□□□ -0.38
COL3A1-201ENST00000304636 ITIH1P19827 911 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 IST1P53990 364 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 LILRA4P59901 499 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 RFTN1Q14699 578 aaPredicted RBP12.66□□□□□ -0.38
COL3A1-201ENST00000304636 DEFB128Q7Z7B8 93 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 PJA1Q8NG27 643 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 LRRC15Q8TF66 581 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 SHISA4Q96DD7 197 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 MTFR1LQ9H019 292 aa12.66□□□□□ -0.38
COL3A1-201ENST00000304636 CHURC1-FNTBB4DL54 471 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 PER2O15055 1255 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 ACADMP11310 421 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 POU2F1P14859 743 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 ATP4BP51164 291 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 CHIT1Q13231 466 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 TCEA2Q15560 299 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 CRTC2Q53ET0 693 aaPredicted RBP12.65□□□□□ -0.38
COL3A1-201ENST00000304636 FAM43BQ6ZT52 329 aaPredicted RBP12.65□□□□□ -0.38
COL3A1-201ENST00000304636 C17orf64Q86WR6 236 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 IGDCC3Q8IVU1 814 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 GPR152Q8TDT2 470 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 MKS1Q9NXB0 559 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 MAT2BQ9NZL9 334 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 ZNF282Q9UDV7 671 aaPredicted RBP12.65□□□□□ -0.38
COL3A1-201ENST00000304636 HMGXB4Q9UGU5 601 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 ADAMTS6Q9UKP5 1117 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 LAPTM5Q13571 262 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 BTG3Q14201 252 aaPredicted RBP12.65□□□□□ -0.38
COL3A1-201ENST00000304636 TAF13Q15543 124 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 RNASE12Q5GAN4 147 aaKnown RBP12.65□□□□□ -0.38
COL3A1-201ENST00000304636 MED27Q6P2C8 311 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 CXCL17Q6UXB2 119 aa12.65□□□□□ -0.38
COL3A1-201ENST00000304636 NCCRP1Q6ZVX7 275 aaPredicted RBP12.65□□□□□ -0.38
COL3A1-201ENST00000304636 SLC51AQ86UW1 340 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms