RNA–Protein interactions for RNA: ENST00000302516.9

SF3B3-201, Transcript of splicing factor 3b subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B3, Length 9,720 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-201ENST00000302516 MKS1Q9NXB0 559 aa7.54□□□□□ -1.2
SF3B3-201ENST00000302516 SMPD4Q9NXE4 827 aa7.54□□□□□ -1.2
SF3B3-201ENST00000302516 CNTN3Q9P232 1028 aa7.54□□□□□ -1.2
SF3B3-201ENST00000302516 MYH14Q7Z406 1995 aaKnown RBP7.54□□□□□ -1.2
SF3B3-201ENST00000302516 ADRA1BP35368 520 aa7.54□□□□□ -1.2
SF3B3-201ENST00000302516 PBX3P40426 434 aa7.54□□□□□ -1.2
SF3B3-201ENST00000302516 ARSHQ5FYA8 562 aa7.54□□□□□ -1.2
SF3B3-201ENST00000302516 CATSPERGQ6ZRH7 1159 aa7.54□□□□□ -1.2
SF3B3-201ENST00000302516 TMEM17Q86X19 198 aa7.54□□□□□ -1.2
SF3B3-201ENST00000302516 C4orf32Q8N8J7 132 aa7.54□□□□□ -1.2
SF3B3-201ENST00000302516 ZBTB8BQ8NAP8 495 aaPredicted RBP7.54□□□□□ -1.2
SF3B3-201ENST00000302516 NCSTNQ92542 709 aa7.54□□□□□ -1.2
SF3B3-201ENST00000302516 APOLD1Q96LR9 279 aa7.54□□□□□ -1.2
SF3B3-201ENST00000302516 MRM3Q9HC36 420 aaKnown RBP7.54□□□□□ -1.2
SF3B3-201ENST00000302516 C1orf109Q9NX04 203 aa7.54□□□□□ -1.2
SF3B3-201ENST00000302516 TBC1D14Q9P2M4 693 aa7.54□□□□□ -1.2
SF3B3-201ENST00000302516 RUVBL1Q9Y265 456 aaKnown RBP7.54□□□□□ -1.2
SF3B3-201ENST00000302516 ATP6AP2A0A1C7CYW4 349 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 TGFB1I1O43294 461 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 ATP6V1G1O75348 118 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 ATP6AP2O75787 350 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 ZNF181Q2M3W8 571 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 LDLRAP1Q5SW96 308 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 SERPINA13PQ6UXR4 307 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 ZNF567Q8N184 647 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 C2orf15Q8WU43 125 aaKnown RBP7.53□□□□□ -1.2
SF3B3-201ENST00000302516 MCMBPQ9BTE3 642 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 SLC29A3Q9BZD2 475 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 MTMR10Q9NXD2 777 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 GRHL1Q9NZI5 618 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 TSPAN4O14817 238 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 MATN3O15232 486 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 ADH1AP07327 375 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 DDX6P26196 483 aaKnown RBP eCLIP7.53□□□□□ -1.26e-17■□□□□ 10.3
SF3B3-201ENST00000302516 SCNN1AP37088 669 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 MAPK12P53778 367 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 MAZP56270 477 aaKnown RBP7.53□□□□□ -1.2
SF3B3-201ENST00000302516 ZNF234Q14588 700 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 HEPACAMQ14CZ8 416 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 NOMO2Q5JPE7 1267 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 CERCAMQ5T4B2 595 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 HID1Q8IV36 788 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 ENDOVQ8N8Q3 282 aaKnown RBP7.53□□□□□ -1.2
SF3B3-201ENST00000302516 GLIS3Q8NEA6 775 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 IPPKQ9H8X2 491 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 PMF1-BGLAPU3KQ54 211 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 PIGBOS1A0A0B4J2F0 54 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 SLC15A5A6NIM6 579 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 ACOX3O15254 700 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 UBXN7O94888 489 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 TAS2R43P59537 309 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 MAB21L1Q13394 359 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 ZMYND11Q15326 602 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 C10orf62Q5T681 223 aaPredicted RBP7.53□□□□□ -1.2
SF3B3-201ENST00000302516 TIGD4Q8IY51 512 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 SPATA6LQ8N4H0 392 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 MAGEH1Q9H213 219 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 BPIFA1Q9NP55 256 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 MARK1Q9P0L2 795 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 LRCH4O75427 683 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 CSDE1O75534 798 aaKnown RBP7.53□□□□□ -1.2
SF3B3-201ENST00000302516 SNX4O95219 450 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 MAPK3P27361 379 aaPredicted RBP7.53□□□□□ -1.2
SF3B3-201ENST00000302516 FAM91A1Q658Y4 838 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 TMPRSS11BQ86T26 416 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 RALGPS2Q86X27 583 aaPredicted RBP7.53□□□□□ -1.2
SF3B3-201ENST00000302516 SLC22A17Q8WUG5 538 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 FEM1CQ96JP0 617 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 OSBPL7Q9BZF2 842 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 TPK1Q9H3S4 243 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 TRIM36Q9NQ86 728 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 PCDHGB2Q9Y5G2 931 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 U3KQV3 271 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 OR2AT4A6NND4 320 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 TPD52L2O43399 206 aaKnown RBP7.53□□□□□ -1.2
SF3B3-201ENST00000302516 ANXA4P09525 319 aaPredicted RBP7.53□□□□□ -1.2
SF3B3-201ENST00000302516 ECHS1P30084 290 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 HOXA10P31260 410 aaPredicted RBP7.53□□□□□ -1.2
SF3B3-201ENST00000302516 ZNF132P52740 706 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 TMBIM6P55061 237 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 DAG1Q14118 895 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 FAM174BQ3ZCQ3 159 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 CRTC2Q53ET0 693 aaPredicted RBP7.53□□□□□ -1.2
SF3B3-201ENST00000302516 KIAA0319LQ8IZA0 1049 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 DNASE1L2Q92874 299 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 RHBDF1Q96CC6 855 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 ZNF558Q96NG5 402 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 GFM1Q96RP9 751 aaKnown RBP7.53□□□□□ -1.2
SF3B3-201ENST00000302516 ITPAQ9BY32 194 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 WDR55Q9H6Y2 383 aaPredicted RBP7.53□□□□□ -1.2
SF3B3-201ENST00000302516 MARCH7Q9H992 704 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 CNTNAP1P78357 1384 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 NELFEP18615 380 aaKnown RBP7.53□□□□□ -1.2
SF3B3-201ENST00000302516 S100A2P29034 98 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 CDH12P55289 794 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 SDR16C5Q8N3Y7 309 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 NEK7Q8TDX7 302 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 TRAPPC12Q8WVT3 735 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 FAM129BQ96TA1 746 aa7.53□□□□□ -1.2
SF3B3-201ENST00000302516 CNPPD1Q9BV87 410 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms