RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 SLC39A1Q9NY26 324 aa18.83■□□□□ 0.6
CLN3-260ENST00000637578 RIMKLBQ9ULI2 386 aa18.83■□□□□ 0.6
CLN3-260ENST00000637578 PSMD13Q9UNM6 376 aa18.83■□□□□ 0.6
CLN3-260ENST00000637578 NEU2Q9Y3R4 380 aa18.83■□□□□ 0.6
CLN3-260ENST00000637578 B3GALT1Q9Y5Z6 326 aa18.83■□□□□ 0.6
CLN3-260ENST00000637578 CFAP99D6REC4 459 aa18.82■□□□□ 0.6
CLN3-260ENST00000637578 GAS8O95995 478 aa18.82■□□□□ 0.6
CLN3-260ENST00000637578 KRT14P02533 472 aa18.82■□□□□ 0.6
CLN3-260ENST00000637578 TYRP1P17643 537 aa18.82■□□□□ 0.6
CLN3-260ENST00000637578 GRIA1P42261 906 aa18.82■□□□□ 0.6
CLN3-260ENST00000637578 CAPZBP47756 277 aa18.82■□□□□ 0.6
CLN3-260ENST00000637578 PPM1FP49593 454 aaPredicted RBP18.82■□□□□ 0.6
CLN3-260ENST00000637578 GFERP55789 205 aa18.82■□□□□ 0.6
CLN3-260ENST00000637578 RAB15P59190 212 aa18.82■□□□□ 0.6
CLN3-260ENST00000637578 CACNG1Q06432 222 aa18.82■□□□□ 0.6
CLN3-260ENST00000637578 SEPT6Q14141 434 aa18.82■□□□□ 0.6
CLN3-260ENST00000637578 SERPINA9Q86WD7 417 aa18.82■□□□□ 0.6
CLN3-260ENST00000637578 LSM14AQ8ND56 463 aaKnown RBP18.82■□□□□ 0.6
CLN3-260ENST00000637578 GPR150Q8NGU9 434 aa18.82■□□□□ 0.6
CLN3-260ENST00000637578 GRK7Q8WTQ7 553 aa18.82■□□□□ 0.6
CLN3-260ENST00000637578 ZFPM2Q8WW38 1151 aa18.82■□□□□ 0.6
CLN3-260ENST00000637578 RANBP9Q96S59 729 aa18.82■□□□□ 0.6
CLN3-260ENST00000637578 INSM2Q96T92 566 aaPredicted RBP18.82■□□□□ 0.6
CLN3-260ENST00000637578 SPRY4Q9C004 299 aa18.82■□□□□ 0.6
CLN3-260ENST00000637578 RAB6BQ9NRW1 208 aa18.82■□□□□ 0.6
CLN3-260ENST00000637578 PCYOX1Q9UHG3 505 aa18.82■□□□□ 0.6
CLN3-260ENST00000637578 ESPNB1AK53 854 aa18.81■□□□□ 0.6
CLN3-260ENST00000637578 PRSS56P0CW18 603 aa18.81■□□□□ 0.6
CLN3-260ENST00000637578 MTHFD1P11586 935 aaKnown RBP18.81■□□□□ 0.6
CLN3-260ENST00000637578 AMD1P17707 334 aa18.81■□□□□ 0.6
CLN3-260ENST00000637578 PBLDP30039 288 aaPredicted RBP18.81■□□□□ 0.6
CLN3-260ENST00000637578 VPS41P49754 854 aa18.81■□□□□ 0.6
CLN3-260ENST00000637578 LAMB3Q13751 1172 aa18.81■□□□□ 0.6
CLN3-260ENST00000637578 WHAMMP3Q1A5X7 153 aa18.81■□□□□ 0.6
CLN3-260ENST00000637578 ZRANB3Q5FWF4 1079 aa18.81■□□□□ 0.6
CLN3-260ENST00000637578 ARHGAP40Q5TG30 622 aa18.81■□□□□ 0.6
CLN3-260ENST00000637578 CAPRIN2Q6IMN6 1127 aaKnown RBP18.81■□□□□ 0.6
CLN3-260ENST00000637578 C4orf22Q6V702 233 aa18.81■□□□□ 0.6
CLN3-260ENST00000637578 ZNF572Q7Z3I7 529 aaPredicted RBP18.81■□□□□ 0.6
CLN3-260ENST00000637578 DNAAF3Q8N9W5 541 aa18.81■□□□□ 0.6
CLN3-260ENST00000637578 OR13J1Q8NGT2 312 aa18.81■□□□□ 0.6
CLN3-260ENST00000637578 RSC1A1Q92681 617 aa18.81■□□□□ 0.6
CLN3-260ENST00000637578 WWP1Q9H0M0 922 aa18.81■□□□□ 0.6
CLN3-260ENST00000637578 SIDT1Q9NXL6 827 aaKnown RBP18.81■□□□□ 0.6
CLN3-260ENST00000637578 MRFAP1Q9Y605 127 aa18.81■□□□□ 0.6
CLN3-260ENST00000637578 HEATR9A2RTY3 570 aa18.81■□□□□ 0.6
CLN3-260ENST00000637578 E7EVH7 732 aa18.81■□□□□ 0.6
CLN3-260ENST00000637578 STMND1H3BQB6 276 aa18.81■□□□□ 0.6
CLN3-260ENST00000637578 CAPN5O15484 640 aaPredicted RBP18.81■□□□□ 0.6
CLN3-260ENST00000637578 ZNF500O60304 480 aaPredicted RBP18.81■□□□□ 0.6
CLN3-260ENST00000637578 ADRA1DP25100 572 aa18.81■□□□□ 0.6
CLN3-260ENST00000637578 ACVR1Q04771 509 aa18.81■□□□□ 0.6
CLN3-260ENST00000637578 CKAP4Q07065 602 aaKnown RBP18.81■□□□□ 0.6
CLN3-260ENST00000637578 C2orf54Q08AI8 447 aa18.81■□□□□ 0.6
CLN3-260ENST00000637578 CCDC38Q502W7 563 aa18.81■□□□□ 0.6
CLN3-260ENST00000637578 DCAF12Q5T6F0 453 aa18.81■□□□□ 0.6
CLN3-260ENST00000637578 CCDC81Q6ZN84 652 aa18.81■□□□□ 0.6
CLN3-260ENST00000637578 PRSS42Q7Z5A4 293 aa18.81■□□□□ 0.6
CLN3-260ENST00000637578 FAM129CQ86XR2 697 aa18.81■□□□□ 0.6
CLN3-260ENST00000637578 HM13Q8TCT9 377 aa18.81■□□□□ 0.6
CLN3-260ENST00000637578 SLCO2A1Q92959 643 aa18.81■□□□□ 0.6
CLN3-260ENST00000637578 TEFMQ96QE5 360 aaKnown RBP18.81■□□□□ 0.6
CLN3-260ENST00000637578 CCM2Q9BSQ5 444 aa18.81■□□□□ 0.6
CLN3-260ENST00000637578 EIF2B3Q9NR50 452 aaKnown RBP18.81■□□□□ 0.6
CLN3-260ENST00000637578 SEMA5BQ9P283 1151 aa18.81■□□□□ 0.6
CLN3-260ENST00000637578 KLHL3Q9UH77 587 aa18.81■□□□□ 0.6
CLN3-260ENST00000637578 ATXN7O15265 892 aaPredicted RBP18.8■□□□□ 0.6
CLN3-260ENST00000637578 FOXN2P32314 431 aa18.8■□□□□ 0.6
CLN3-260ENST00000637578 LEPRP48357 1165 aaKnown RBP18.8■□□□□ 0.6
CLN3-260ENST00000637578 BASP1P80723 227 aaKnown RBP18.8■□□□□ 0.6
CLN3-260ENST00000637578 GPS1Q13098 491 aa18.8■□□□□ 0.6
CLN3-260ENST00000637578 DBN1Q16643 649 aa18.8■□□□□ 0.6
CLN3-260ENST00000637578 TSTD2Q5T7W7 516 aa18.8■□□□□ 0.6
CLN3-260ENST00000637578 ANKS6Q68DC2 871 aa18.8■□□□□ 0.6
CLN3-260ENST00000637578 PCSK4Q6UW60 755 aa18.8■□□□□ 0.6
CLN3-260ENST00000637578 PPP1R21Q6ZMI0 780 aa18.8■□□□□ 0.6
CLN3-260ENST00000637578 TAS2R42Q7RTR8 314 aa18.8■□□□□ 0.6
CLN3-260ENST00000637578 CFAP206Q8IYR0 622 aa18.8■□□□□ 0.6
CLN3-260ENST00000637578 LILRA3Q8N6C8 439 aaPredicted RBP18.8■□□□□ 0.6
CLN3-260ENST00000637578 SPDYE1Q8NFV5 336 aaPredicted RBP18.8■□□□□ 0.6
CLN3-260ENST00000637578 PEX13Q92968 403 aa18.8■□□□□ 0.6
CLN3-260ENST00000637578 SGSM3Q96HU1 749 aa18.8■□□□□ 0.6
CLN3-260ENST00000637578 RUNDC3BQ96NL0 473 aa18.8■□□□□ 0.6
CLN3-260ENST00000637578 TGM7Q96PF1 710 aa18.8■□□□□ 0.6
CLN3-260ENST00000637578 KRT12Q99456 494 aa18.8■□□□□ 0.6
CLN3-260ENST00000637578 ZPBPQ9BS86 351 aa18.8■□□□□ 0.6
CLN3-260ENST00000637578 ZNF768Q9H5H4 540 aaKnown RBP18.8■□□□□ 0.6
CLN3-260ENST00000637578 PCDHB11Q9Y5F2 797 aa18.8■□□□□ 0.6
CLN3-260ENST00000637578 SDK2Q58EX2 2172 aa18.79■□□□□ 0.6
CLN3-260ENST00000637578 CCDC162PA2VCL2 907 aa18.79■□□□□ 0.6
CLN3-260ENST00000637578 TK2O00142 265 aa18.79■□□□□ 0.6
CLN3-260ENST00000637578 AP2A2O94973 939 aa18.79■□□□□ 0.6
CLN3-260ENST00000637578 APRTP07741 180 aa18.79■□□□□ 0.6
CLN3-260ENST00000637578 GSTM1P09488 218 aa18.79■□□□□ 0.6
CLN3-260ENST00000637578 PTGIRP43119 386 aa18.79■□□□□ 0.6
CLN3-260ENST00000637578 LMAN1P49257 510 aa18.79■□□□□ 0.6
CLN3-260ENST00000637578 DR1Q01658 176 aa18.79■□□□□ 0.6
CLN3-260ENST00000637578 RHDQ02161 417 aa18.79■□□□□ 0.6
CLN3-260ENST00000637578 GSTM4Q03013 218 aa18.79■□□□□ 0.6
CLN3-260ENST00000637578 TUBB2AQ13885 445 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms