RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 ABCG4Q9H172 646 aa17.74■□□□□ 0.43
CLN3-239ENST00000628023 IARS2Q9NSE4 1012 aaKnown RBP17.74■□□□□ 0.43
CLN3-239ENST00000628023 GNPTGQ9UJJ9 305 aa17.74■□□□□ 0.43
CLN3-239ENST00000628023 RNF215Q9Y6U7 377 aa17.74■□□□□ 0.43
CLN3-239ENST00000628023 BAHCC1Q9P281 2608 aa17.73■□□□□ 0.43
CLN3-239ENST00000628023 KIR2DS5A0A0G2JLQ3 304 aa17.73■□□□□ 0.43
CLN3-239ENST00000628023 A0A0G2JNG1 304 aa17.73■□□□□ 0.43
CLN3-239ENST00000628023 OR5K4A6NMS3 321 aa17.73■□□□□ 0.43
CLN3-239ENST00000628023 E7ESA3 106 aa17.73■□□□□ 0.43
CLN3-239ENST00000628023 KIR2DS3K7RE56 304 aa17.73■□□□□ 0.43
CLN3-239ENST00000628023 GP1BAP07359 652 aa17.73■□□□□ 0.43
CLN3-239ENST00000628023 GSTM1P09488 218 aa17.73■□□□□ 0.43
CLN3-239ENST00000628023 SLC35G4P0C7Q5 338 aa17.73■□□□□ 0.43
CLN3-239ENST00000628023 ERVK-10P10266 1014 aa17.73■□□□□ 0.43
CLN3-239ENST00000628023 GLB1P16278 677 aa17.73■□□□□ 0.43
CLN3-239ENST00000628023 ITGB6P18564 788 aa17.73■□□□□ 0.43
CLN3-239ENST00000628023 PPM1FP49593 454 aaPredicted RBP17.73■□□□□ 0.43
CLN3-239ENST00000628023 GSTM4Q03013 218 aa17.73■□□□□ 0.43
CLN3-239ENST00000628023 KIR2DS5Q14953 304 aa17.73■□□□□ 0.43
CLN3-239ENST00000628023 FASTKD3Q14CZ7 662 aaKnown RBP17.73■□□□□ 0.43
CLN3-239ENST00000628023 TYSND1Q2T9J0 566 aa17.73■□□□□ 0.43
CLN3-239ENST00000628023 SYTL3Q4VX76 610 aa17.73■□□□□ 0.43
CLN3-239ENST00000628023 HSP90AA5PQ58FG0 334 aa17.73■□□□□ 0.43
CLN3-239ENST00000628023 IYDQ6PHW0 289 aa17.73■□□□□ 0.43
CLN3-239ENST00000628023 ZDHHC24Q6UX98 284 aa17.73■□□□□ 0.43
CLN3-239ENST00000628023 UNC5AQ6ZN44 842 aa17.73■□□□□ 0.43
CLN3-239ENST00000628023 FAM83HQ6ZRV2 1179 aaPredicted RBP17.73■□□□□ 0.43
CLN3-239ENST00000628023 SLC9B2Q86UD5 537 aa17.73■□□□□ 0.43
CLN3-239ENST00000628023 LRRC6Q86X45 466 aa17.73■□□□□ 0.43
CLN3-239ENST00000628023 CILP2Q8IUL8 1156 aa17.73■□□□□ 0.43
CLN3-239ENST00000628023 LMNTD2Q8IXW0 634 aa17.73■□□□□ 0.43
CLN3-239ENST00000628023 SFRP1Q8N474 314 aa17.73■□□□□ 0.43
CLN3-239ENST00000628023 AVL9Q8NBF6 648 aa17.73■□□□□ 0.43
CLN3-239ENST00000628023 ELMO1Q92556 727 aa17.73■□□□□ 0.43
CLN3-239ENST00000628023 CERS2Q96G23 380 aa17.73■□□□□ 0.43
CLN3-239ENST00000628023 TCF12Q99081 682 aa17.73■□□□□ 0.43
CLN3-239ENST00000628023 CCDC3Q9BQI4 270 aa17.73■□□□□ 0.43
CLN3-239ENST00000628023 WDR83Q9BRX9 315 aaKnown RBP17.73■□□□□ 0.43
CLN3-239ENST00000628023 LRIT1Q9P2V4 623 aa17.73■□□□□ 0.43
CLN3-239ENST00000628023 ACSL5Q9ULC5 683 aa17.73■□□□□ 0.43
CLN3-239ENST00000628023 PSMD13Q9UNM6 376 aa17.73■□□□□ 0.43
CLN3-239ENST00000628023 C17orf113A0A1B0GUU1 675 aa17.72■□□□□ 0.43
CLN3-239ENST00000628023 A6NCN8 305 aa17.72■□□□□ 0.43
CLN3-239ENST00000628023 NUDT21O43809 227 aaKnown RBP17.72■□□□□ 0.43
CLN3-239ENST00000628023 SLC1A2P43004 574 aa17.72■□□□□ 0.43
CLN3-239ENST00000628023 INSM1Q01101 510 aaPredicted RBP17.72■□□□□ 0.43
CLN3-239ENST00000628023 HHEXQ03014 270 aa17.72■□□□□ 0.43
CLN3-239ENST00000628023 CTBP1Q13363 440 aa17.72■□□□□ 0.43
CLN3-239ENST00000628023 BOP1Q14137 746 aaKnown RBP17.72■□□□□ 0.43
CLN3-239ENST00000628023 PERM1Q5SV97 790 aa17.72■□□□□ 0.43
CLN3-239ENST00000628023 AGAP9Q5VTM2 703 aa17.72■□□□□ 0.43
CLN3-239ENST00000628023 CAPN12Q6ZSI9 719 aa17.72■□□□□ 0.43
CLN3-239ENST00000628023 DENND6AQ8IWF6 608 aa17.72■□□□□ 0.43
CLN3-239ENST00000628023 PALM2Q8IXS6 379 aa17.72■□□□□ 0.43
CLN3-239ENST00000628023 UNC5BQ8IZJ1 945 aa17.72■□□□□ 0.43
CLN3-239ENST00000628023 DCBLD1Q8N8Z6 715 aa17.72■□□□□ 0.43
CLN3-239ENST00000628023 GSDMBQ8TAX9 411 aa17.72■□□□□ 0.43
CLN3-239ENST00000628023 IFT81Q8WYA0 676 aa17.72■□□□□ 0.43
CLN3-239ENST00000628023 CXorf40BQ96DE9 158 aa17.72■□□□□ 0.43
CLN3-239ENST00000628023 FOXP3Q9BZS1 431 aa17.72■□□□□ 0.43
CLN3-239ENST00000628023 ZMYND15Q9H091 742 aa17.72■□□□□ 0.43
CLN3-239ENST00000628023 COG4Q9H9E3 785 aa17.72■□□□□ 0.43
CLN3-239ENST00000628023 L2HGDHQ9H9P8 463 aa17.72■□□□□ 0.43
CLN3-239ENST00000628023 FBXO6Q9NRD1 293 aaPredicted RBP17.72■□□□□ 0.43
CLN3-239ENST00000628023 INTS10Q9NVR2 710 aaKnown RBP17.72■□□□□ 0.43
CLN3-239ENST00000628023 MTRF1LQ9UGC7 380 aaKnown RBP17.72■□□□□ 0.43
CLN3-239ENST00000628023 DMGDHQ9UI17 866 aaKnown RBP17.72■□□□□ 0.43
CLN3-239ENST00000628023 CRYL1Q9Y2S2 319 aa17.72■□□□□ 0.43
CLN3-239ENST00000628023 LAMA5O15230 3695 aa17.71■□□□□ 0.43
CLN3-239ENST00000628023 FASNP49327 2511 aaKnown RBP17.71■□□□□ 0.43
CLN3-239ENST00000628023 ASXL3Q9C0F0 2248 aa17.71■□□□□ 0.43
CLN3-239ENST00000628023 PRR19A6NJB7 356 aa17.71■□□□□ 0.43
CLN3-239ENST00000628023 ZW10O43264 779 aa17.71■□□□□ 0.43
CLN3-239ENST00000628023 MT-CO3P00414 261 aa17.71■□□□□ 0.43
CLN3-239ENST00000628023 VIPP01282 170 aa17.71■□□□□ 0.43
CLN3-239ENST00000628023 RHOXF2BP0C7M4 288 aa17.71■□□□□ 0.43
CLN3-239ENST00000628023 RPS3P23396 243 aaKnown RBP eCLIP17.71■□□□□ 0.434e-6■■□□□ 12.9
CLN3-239ENST00000628023 FMO4P31512 558 aa17.71■□□□□ 0.43
CLN3-239ENST00000628023 EIF2S3P41091 472 aaKnown RBP17.71■□□□□ 0.43
CLN3-239ENST00000628023 BRD3Q15059 726 aa17.71■□□□□ 0.43
CLN3-239ENST00000628023 SOWAHCQ53LP3 525 aaPredicted RBP17.71■□□□□ 0.43
CLN3-239ENST00000628023 METRNLQ641Q3 311 aa17.71■□□□□ 0.43
CLN3-239ENST00000628023 STEAP4Q687X5 459 aa17.71■□□□□ 0.43
CLN3-239ENST00000628023 ABRAXAS1Q6UWZ7 409 aa17.71■□□□□ 0.43
CLN3-239ENST00000628023 WASH2PQ6VEQ5 465 aa17.71■□□□□ 0.43
CLN3-239ENST00000628023 C17orf82Q86X59 251 aaPredicted RBP17.71■□□□□ 0.43
CLN3-239ENST00000628023 Q8N9G6 341 aaPredicted RBP17.71■□□□□ 0.43
CLN3-239ENST00000628023 SEC14L1Q92503 715 aa17.71■□□□□ 0.43
CLN3-239ENST00000628023 LPGAT1Q92604 370 aa17.71■□□□□ 0.43
CLN3-239ENST00000628023 FGF11Q92914 225 aa17.71■□□□□ 0.43
CLN3-239ENST00000628023 PANX3Q96QZ0 392 aa17.71■□□□□ 0.43
CLN3-239ENST00000628023 SLC38A3Q99624 504 aa17.71■□□□□ 0.43
CLN3-239ENST00000628023 RHOXF2Q9BQY4 288 aa17.71■□□□□ 0.43
CLN3-239ENST00000628023 FAM129AQ9BZQ8 928 aa17.71■□□□□ 0.43
CLN3-239ENST00000628023 PHACTR1Q9C0D0 580 aa17.71■□□□□ 0.43
CLN3-239ENST00000628023 WWP1Q9H0M0 922 aa17.71■□□□□ 0.43
CLN3-239ENST00000628023 CCDC68Q9H2F9 335 aa17.71■□□□□ 0.43
CLN3-239ENST00000628023 WASH6PQ9NQA3 447 aa17.71■□□□□ 0.43
CLN3-239ENST00000628023 SCHIP1Q9P0W5 487 aaPredicted RBP17.71■□□□□ 0.43
CLN3-239ENST00000628023 CPNE7Q9UBL6 633 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms