RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 IGKV6D-21A0A0A0MT36 114 aa2.4□□□□□ -2.03
SCN1A-208ENST00000625916 A0A1W2PRG0 241 aa2.4□□□□□ -2.03
SCN1A-208ENST00000625916 J3QR06 171 aa2.4□□□□□ -2.03
SCN1A-208ENST00000625916 SOCS3O14543 225 aa2.4□□□□□ -2.03
SCN1A-208ENST00000625916 KLF11O14901 512 aa2.4□□□□□ -2.03
SCN1A-208ENST00000625916 BCL2L11O43521 198 aa2.4□□□□□ -2.03
SCN1A-208ENST00000625916 KHDRBS3O75525 346 aaKnown RBP2.4□□□□□ -2.03
SCN1A-208ENST00000625916 SLC25A12O75746 678 aa2.4□□□□□ -2.03
SCN1A-208ENST00000625916 IGHV3-13P01766 116 aa2.4□□□□□ -2.03
SCN1A-208ENST00000625916 ITIH1P19827 911 aa2.4□□□□□ -2.03
SCN1A-208ENST00000625916 RARSP54136 660 aaKnown RBP2.4□□□□□ -2.03
SCN1A-208ENST00000625916 GSDMDP57764 484 aa2.4□□□□□ -2.03
SCN1A-208ENST00000625916 PRKAA1Q13131 559 aa2.4□□□□□ -2.03
SCN1A-208ENST00000625916 TAF13Q15543 124 aa2.4□□□□□ -2.03
SCN1A-208ENST00000625916 BAK1Q16611 211 aa2.4□□□□□ -2.03
SCN1A-208ENST00000625916 PRICKLE4Q2TBC4 344 aa2.4□□□□□ -2.03
SCN1A-208ENST00000625916 DPCR1Q3MIW9 517 aa2.4□□□□□ -2.03
SCN1A-208ENST00000625916 DCAF10Q5QP82 559 aa2.4□□□□□ -2.03
SCN1A-208ENST00000625916 ZNF554Q86TJ5 538 aa2.4□□□□□ -2.03
SCN1A-208ENST00000625916 ANKRD18AQ8IVF6 992 aa2.4□□□□□ -2.03
SCN1A-208ENST00000625916 DCLK2Q8N568 766 aa2.4□□□□□ -2.03
SCN1A-208ENST00000625916 OR4C3Q8NH37 302 aa2.4□□□□□ -2.03
SCN1A-208ENST00000625916 OR8K5Q8NH50 307 aa2.4□□□□□ -2.03
SCN1A-208ENST00000625916 NFKBIDQ8NI38 313 aa2.4□□□□□ -2.03
SCN1A-208ENST00000625916 MYADMQ96S97 322 aa2.4□□□□□ -2.03
SCN1A-208ENST00000625916 KRT12Q99456 494 aa2.4□□□□□ -2.03
SCN1A-208ENST00000625916 TRAF4Q9BUZ4 470 aaPredicted RBP2.4□□□□□ -2.03
SCN1A-208ENST00000625916 WWTR1Q9GZV5 400 aa2.4□□□□□ -2.03
SCN1A-208ENST00000625916 DENND2DQ9H6A0 471 aaPredicted RBP2.4□□□□□ -2.03
SCN1A-208ENST00000625916 MBNL1Q9NR56 388 aaKnown RBP2.4□□□□□ -2.03
SCN1A-208ENST00000625916 PCDHB16Q9NRJ7 776 aa2.4□□□□□ -2.03
SCN1A-208ENST00000625916 THEGQ9P2T0 379 aa2.4□□□□□ -2.03
SCN1A-208ENST00000625916 EXO1Q9UQ84 846 aaKnown RBP2.4□□□□□ -2.03
SCN1A-208ENST00000625916 IGHV3OR16-10A0A075B7F0 116 aa2.39□□□□□ -2.03
SCN1A-208ENST00000625916 IDH3BO43837 385 aa2.39□□□□□ -2.03
SCN1A-208ENST00000625916 C22orf31O95567 290 aa2.39□□□□□ -2.03
SCN1A-208ENST00000625916 CNTFP26441 200 aa2.39□□□□□ -2.03
SCN1A-208ENST00000625916 RBMS1P29558 406 aaKnown RBP2.39□□□□□ -2.03
SCN1A-208ENST00000625916 MMP12P39900 470 aa2.39□□□□□ -2.03
SCN1A-208ENST00000625916 TAS2R40P59535 323 aa2.39□□□□□ -2.03
SCN1A-208ENST00000625916 TLE2Q04725 743 aa2.39□□□□□ -2.03
SCN1A-208ENST00000625916 NFATC2Q13469 925 aa2.39□□□□□ -2.03
SCN1A-208ENST00000625916 TRPC3Q13507 836 aa2.39□□□□□ -2.03
SCN1A-208ENST00000625916 MVPQ14764 893 aaKnown RBP2.39□□□□□ -2.03
SCN1A-208ENST00000625916 LRIF1Q5T3J3 769 aa2.39□□□□□ -2.03
SCN1A-208ENST00000625916 LCE1CQ5T751 118 aa2.39□□□□□ -2.03
SCN1A-208ENST00000625916 LCE1BQ5T7P3 118 aa2.39□□□□□ -2.03
SCN1A-208ENST00000625916 FIP1L1Q6UN15 594 aaKnown RBP2.39□□□□□ -2.03
SCN1A-208ENST00000625916 LDHAL6AQ6ZMR3 332 aa2.39□□□□□ -2.03
SCN1A-208ENST00000625916 SEPT14Q6ZU15 432 aa2.39□□□□□ -2.03
SCN1A-208ENST00000625916 ZNF534Q76KX8 674 aa2.39□□□□□ -2.03
SCN1A-208ENST00000625916 HOGA1Q86XE5 327 aa2.39□□□□□ -2.03
SCN1A-208ENST00000625916 SLC34A3Q8N130 599 aa2.39□□□□□ -2.03
SCN1A-208ENST00000625916 PRSS33Q8NF86 280 aa2.39□□□□□ -2.03
SCN1A-208ENST00000625916 OR5AP2Q8NGF4 316 aa2.39□□□□□ -2.03
SCN1A-208ENST00000625916 OR1J1Q8NGS3 322 aa2.39□□□□□ -2.03
SCN1A-208ENST00000625916 HSD17B8Q92506 261 aa2.39□□□□□ -2.03
SCN1A-208ENST00000625916 ARHGAP45Q92619 1136 aa2.39□□□□□ -2.03
SCN1A-208ENST00000625916 DYRK2Q92630 601 aa2.39□□□□□ -2.03
SCN1A-208ENST00000625916 HVCN1Q96D96 273 aa2.39□□□□□ -2.03
SCN1A-208ENST00000625916 RNF125Q96EQ8 232 aa2.39□□□□□ -2.03
SCN1A-208ENST00000625916 GFI1Q99684 422 aa2.39□□□□□ -2.03
SCN1A-208ENST00000625916 PITPNM3Q9BZ71 974 aa2.39□□□□□ -2.03
SCN1A-208ENST00000625916 MTMR10Q9NXD2 777 aa2.39□□□□□ -2.03
SCN1A-208ENST00000625916 CLIP2Q9UDT6 1046 aa2.39□□□□□ -2.03
SCN1A-208ENST00000625916 TUBE1Q9UJT0 475 aa2.39□□□□□ -2.03
SCN1A-208ENST00000625916 DBNLQ9UJU6 430 aaKnown RBP2.39□□□□□ -2.03
SCN1A-208ENST00000625916 EPM2AB3EWF7 344 aa2.38□□□□□ -2.03
SCN1A-208ENST00000625916 ZNF195O14628 629 aa2.38□□□□□ -2.03
SCN1A-208ENST00000625916 PAGE4O60829 102 aa2.38□□□□□ -2.03
SCN1A-208ENST00000625916 DAB1O75553 588 aa2.38□□□□□ -2.03
SCN1A-208ENST00000625916 KRTAP5-8O75690 187 aa2.38□□□□□ -2.03
SCN1A-208ENST00000625916 PIGNO95427 931 aa2.38□□□□□ -2.03
SCN1A-208ENST00000625916 ACP2P11117 423 aa2.38□□□□□ -2.03
SCN1A-208ENST00000625916 SELLP14151 372 aa2.38□□□□□ -2.03
SCN1A-208ENST00000625916 VAMP2P63027 116 aa2.38□□□□□ -2.03
SCN1A-208ENST00000625916 PAX8Q06710 450 aa2.38□□□□□ -2.03
SCN1A-208ENST00000625916 LRMPQ12912 555 aa2.38□□□□□ -2.03
SCN1A-208ENST00000625916 OS9Q13438 667 aaPredicted RBP2.38□□□□□ -2.03
SCN1A-208ENST00000625916 FASTKD3Q14CZ7 662 aaKnown RBP2.38□□□□□ -2.03
SCN1A-208ENST00000625916 NAB2Q15742 525 aa2.38□□□□□ -2.03
SCN1A-208ENST00000625916 ADIPOQQ15848 244 aa2.38□□□□□ -2.03
SCN1A-208ENST00000625916 CCNG2Q16589 344 aa2.38□□□□□ -2.03
SCN1A-208ENST00000625916 MEP1AQ16819 746 aa2.38□□□□□ -2.03
SCN1A-208ENST00000625916 PTAR1Q7Z6K3 402 aaPredicted RBP2.38□□□□□ -2.03
SCN1A-208ENST00000625916 TBC1D1Q86TI0 1168 aaPredicted RBP2.38□□□□□ -2.03
SCN1A-208ENST00000625916 PIGZQ86VD9 579 aa2.38□□□□□ -2.03
SCN1A-208ENST00000625916 LACC1Q8IV20 430 aa2.38□□□□□ -2.03
SCN1A-208ENST00000625916 POM121L12Q8N7R1 296 aa2.38□□□□□ -2.03
SCN1A-208ENST00000625916 NIPA2Q8N8Q9 360 aa2.38□□□□□ -2.03
SCN1A-208ENST00000625916 SLCO2A1Q92959 643 aa2.38□□□□□ -2.03
SCN1A-208ENST00000625916 GCC1Q96CN9 775 aa2.38□□□□□ -2.03
SCN1A-208ENST00000625916 NR1H4Q96RI1 486 aaPredicted RBP2.38□□□□□ -2.03
SCN1A-208ENST00000625916 SEPT5Q99719 369 aaPredicted RBP2.38□□□□□ -2.03
SCN1A-208ENST00000625916 STRA6Q9BX79 667 aa2.38□□□□□ -2.03
SCN1A-208ENST00000625916 PUS3Q9BZE2 481 aaKnown RBP2.38□□□□□ -2.03
SCN1A-208ENST00000625916 ACKR4Q9NPB9 350 aa2.38□□□□□ -2.03
SCN1A-208ENST00000625916 NOL12Q9UGY1 213 aaKnown RBP eCLIP2.38□□□□□ -2.03
SCN1A-208ENST00000625916 CELA1Q9UNI1 258 aa2.38□□□□□ -2.03
SCN1A-208ENST00000625916 PPP1R3CQ9UQK1 317 aa2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms