RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 GPR18Q14330 331 aa13.2□□□□□ -0.3
LINC00540-202ENST00000616974 RPE65Q16518 533 aa13.2□□□□□ -0.3
LINC00540-202ENST00000616974 TYSND1Q2T9J0 566 aa13.2□□□□□ -0.3
LINC00540-202ENST00000616974 PACS1Q6VY07 963 aa13.2□□□□□ -0.3
LINC00540-202ENST00000616974 ERMP1Q7Z2K6 904 aa13.2□□□□□ -0.3
LINC00540-202ENST00000616974 CCNJLQ8IV13 435 aa13.2□□□□□ -0.3
LINC00540-202ENST00000616974 ART4Q93070 314 aa13.2□□□□□ -0.3
LINC00540-202ENST00000616974 SGSM3Q96HU1 749 aa13.2□□□□□ -0.3
LINC00540-202ENST00000616974 LINC00615Q96LM1 132 aaPredicted RBP13.2□□□□□ -0.3
LINC00540-202ENST00000616974 C9orf72Q96LT7 481 aa13.2□□□□□ -0.3
LINC00540-202ENST00000616974 RUNDC3BQ96NL0 473 aa13.2□□□□□ -0.3
LINC00540-202ENST00000616974 TMEM121BQ9BXQ6 578 aaPredicted RBP13.2□□□□□ -0.3
LINC00540-202ENST00000616974 OR52A5Q9H2C5 316 aa13.2□□□□□ -0.3
LINC00540-202ENST00000616974 ZDHHC18Q9NUE0 388 aa13.2□□□□□ -0.3
LINC00540-202ENST00000616974 OGFRQ9NZT2 677 aa13.2□□□□□ -0.3
LINC00540-202ENST00000616974 ZC3H7BQ9UGR2 993 aaKnown RBP13.2□□□□□ -0.3
LINC00540-202ENST00000616974 PCDHGA1Q9Y5H4 931 aa13.2□□□□□ -0.3
LINC00540-202ENST00000616974 FAM169AQ9Y6X4 670 aa13.2□□□□□ -0.3
LINC00540-202ENST00000616974 KALRNO60229 2985 aa13.2□□□□□ -0.3
LINC00540-202ENST00000616974 SPENQ96T58 3664 aaKnown RBP13.2□□□□□ -0.3
LINC00540-202ENST00000616974 ATRXP46100 2492 aa13.2□□□□□ -0.3
LINC00540-202ENST00000616974 C1QTNF9BB2RNN3 333 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 E7ESA3 106 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 NTN3O00634 580 aaPredicted RBP13.19□□□□□ -0.3
LINC00540-202ENST00000616974 C1QTNF9P0C862 333 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 HGFP14210 728 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 TYRP1P17643 537 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 IDSP22304 550 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 CD1CP29017 333 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 FASLGP48023 281 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 TIAL1Q01085 375 aaKnown RBP eCLIP13.19□□□□□ -0.3
LINC00540-202ENST00000616974 CDCP2Q5VXM1 449 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 ABRAXAS1Q6UWZ7 409 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 TMPRSS7Q7RTY8 843 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 PCGF5Q86SE9 256 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 KCNMB4Q86W47 210 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 CCDC25Q86WR0 208 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 PDIK1LQ8N165 341 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 MMGT1Q8N4V1 131 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.19□□□□□ -0.3
LINC00540-202ENST00000616974 GIMAP7Q8NHV1 300 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 ELMO1Q92556 727 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 RSC1A1Q92681 617 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 ATXN7L3BQ96GX2 97 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 C12orf66Q96MD2 445 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 CCM2Q9BSQ5 444 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 ABCG4Q9H172 646 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 SEMA6CQ9H3T2 930 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 EPB41L5Q9HCM4 733 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 SAYSD1Q9NPB0 183 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 WHRNQ9P202 907 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 IGSF10Q6WRI0 2623 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 IGHV1OR21-1A0A087WYE8 117 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 RHPN2P1A8MT19 583 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 MAPK9P45984 424 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 CUL1Q13616 776 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 ITIH4Q14624 930 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 LONRF1Q17RB8 773 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 RBM20Q5T481 1227 aaKnown RBP13.19□□□□□ -0.3
LINC00540-202ENST00000616974 PPM1MQ96MI6 270 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 NDNQ99608 321 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 SLC40A1Q9NP59 571 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 NFS1Q9Y697 457 aa13.19□□□□□ -0.3
LINC00540-202ENST00000616974 CTAGE15A4D2H0 777 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 CXorf49A8MYA2 514 aaPredicted RBP13.18□□□□□ -0.3
LINC00540-202ENST00000616974 D6RAR5 112 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 CFAP99D6REC4 459 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 PRMT5O14744 637 aaPredicted RBP13.18□□□□□ -0.3
LINC00540-202ENST00000616974 MT-CO3P00414 261 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 GP1BAP07359 652 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 CTAGE8P0CG41 777 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 TPBGLP0DKB5 382 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 RALBP11234 206 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 GFERP55789 205 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 ARL4CP56559 192 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 GPX6P59796 221 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 HSPA14Q0VDF9 509 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 PRKG2Q13237 762 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 CTAGE6Q86UF2 777 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 CTAGE4Q8IX94 777 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 GSPT2Q8IYD1 628 aaKnown RBP13.18□□□□□ -0.3
LINC00540-202ENST00000616974 SEC14L1Q92503 715 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 NAT6Q93015 286 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 LRRN3Q9H3W5 708 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 SARS2Q9NP81 518 aaKnown RBP13.18□□□□□ -0.3
LINC00540-202ENST00000616974 KLHL3Q9UH77 587 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 PLAGL1Q9UM63 463 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 UTP11Q9Y3A2 253 aaKnown RBP13.18□□□□□ -0.3
LINC00540-202ENST00000616974 FER1L5A0AVI2 2057 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 PRRC2CQ9Y520 2896 aaKnown RBP13.18□□□□□ -0.3
LINC00540-202ENST00000616974 SLC5A10A0PJK1 596 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 KIF2AO00139 706 aaPredicted RBP13.18□□□□□ -0.3
LINC00540-202ENST00000616974 AP3B1O00203 1094 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 KIF1CO43896 1103 aaKnown RBP13.18□□□□□ -0.3
LINC00540-202ENST00000616974 CSO75390 466 aaKnown RBP13.18□□□□□ -0.3
LINC00540-202ENST00000616974 NDUFS3O75489 264 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 C1QAP02745 245 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 RHOXF2BP0C7M4 288 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 JUPP14923 745 aa13.18□□□□□ -0.3
LINC00540-202ENST00000616974 GMPRP36959 345 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms