RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 STSP08842 583 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 CD63P08962 238 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 PIRTP0C851 137 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 GZMAP12544 262 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 HLA-DPA1P20036 260 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 CDH3P22223 829 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 FOLR3P41439 243 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 TSFMP43897 325 aaKnown RBP9.85□□□□□ -0.83
TRIM28-210ENST00000597618 PREPP48147 710 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 SOX8P57073 446 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 SLC25A11Q02978 314 aaKnown RBP9.85□□□□□ -0.83
TRIM28-210ENST00000597618 UBXN1Q04323 297 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 ART3Q13508 389 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 PIGHQ14442 188 aaPredicted RBP9.85□□□□□ -0.83
TRIM28-210ENST00000597618 BECN1Q14457 450 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 ANO6Q4KMQ2 910 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 ATP13A5Q4VNC0 1218 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 CCDC183Q5T5S1 534 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 FBXO38Q6PIJ6 1188 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 SPOCD1Q6ZMY3 1216 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 FAM83HQ6ZRV2 1179 aaPredicted RBP9.85□□□□□ -0.83
TRIM28-210ENST00000597618 FJX1Q86VR8 437 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 GRHL3Q8TE85 626 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 PPP4R1Q8TF05 950 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 FAR1Q8WVX9 515 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 AGAP3Q96P47 875 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 TRAPPC9Q96Q05 1148 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 ERGIC2Q96RQ1 377 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 TRIB3Q96RU7 358 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 SRPK1Q96SB4 655 aaKnown RBP9.85□□□□□ -0.83
TRIM28-210ENST00000597618 C1GALT1Q9NS00 363 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 P4HTMQ9NXG6 502 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 MYO1AQ9UBC5 1043 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 GPN3Q9UHW5 284 aaPredicted RBP9.85□□□□□ -0.83
TRIM28-210ENST00000597618 SLC24A2Q9UI40 661 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 SERTAD3Q9UJW9 196 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 POMT2Q9UKY4 750 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 TMPRSS11EQ9UL52 423 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 MYO6Q9UM54 1294 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 CFAP20Q9Y6A4 193 aaKnown RBP9.85□□□□□ -0.83
TRIM28-210ENST00000597618 DNMT3AQ9Y6K1 912 aaPredicted RBP9.85□□□□□ -0.83
TRIM28-210ENST00000597618 DDX3YO15523 660 aaKnown RBP9.84□□□□□ -0.83
TRIM28-210ENST00000597618 ZNF749O43361 778 aa9.84□□□□□ -0.83
TRIM28-210ENST00000597618 ARCN1P48444 511 aaKnown RBP9.84□□□□□ -0.83
TRIM28-210ENST00000597618 MMRN1Q13201 1228 aa9.84□□□□□ -0.83
TRIM28-210ENST00000597618 NFE2L1Q14494 772 aa9.84□□□□□ -0.83
TRIM28-210ENST00000597618 CYP2A13Q16696 494 aa9.84□□□□□ -0.83
TRIM28-210ENST00000597618 ZFYVE27Q5T4F4 411 aa9.84□□□□□ -0.83
TRIM28-210ENST00000597618 ZDHHC20Q5W0Z9 365 aa9.84□□□□□ -0.83
TRIM28-210ENST00000597618 METRNLQ641Q3 311 aa9.84□□□□□ -0.83
TRIM28-210ENST00000597618 ZNF385CQ66K41 422 aaPredicted RBP9.84□□□□□ -0.83
TRIM28-210ENST00000597618 B3GNTL1Q67FW5 361 aaPredicted RBP9.84□□□□□ -0.83
TRIM28-210ENST00000597618 FCRL6Q6DN72 434 aa9.84□□□□□ -0.83
TRIM28-210ENST00000597618 B4GALNT4Q76KP1 1039 aa9.84□□□□□ -0.83
TRIM28-210ENST00000597618 BEND7Q8N7W2 519 aaPredicted RBP9.84□□□□□ -0.83
TRIM28-210ENST00000597618 NIPA2Q8N8Q9 360 aa9.84□□□□□ -0.83
TRIM28-210ENST00000597618 FAM71BQ8TC56 605 aa9.84□□□□□ -0.83
TRIM28-210ENST00000597618 HDAC11Q96DB2 347 aa9.84□□□□□ -0.83
TRIM28-210ENST00000597618 C12orf66Q96MD2 445 aa9.84□□□□□ -0.83
TRIM28-210ENST00000597618 PPM1MQ96MI6 270 aa9.84□□□□□ -0.83
TRIM28-210ENST00000597618 GBP5Q96PP8 586 aa9.84□□□□□ -0.83
TRIM28-210ENST00000597618 ZBTB20Q9HC78 741 aaPredicted RBP9.84□□□□□ -0.83
TRIM28-210ENST00000597618 CHST11Q9NPF2 352 aa9.84□□□□□ -0.83
TRIM28-210ENST00000597618 ATP13A2Q9NQ11 1180 aa9.84□□□□□ -0.83
TRIM28-210ENST00000597618 PTRH2Q9Y3E5 179 aaKnown RBP9.84□□□□□ -0.83
TRIM28-210ENST00000597618 SEC16AO15027 2179 aa9.84□□□□□ -0.83
TRIM28-210ENST00000597618 PKDREJQ9NTG1 2253 aa9.84□□□□□ -0.83
TRIM28-210ENST00000597618 DNHD1Q96M86 4753 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 PIKFYVEQ9Y2I7 2098 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 GSAPA4D1B5 854 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 KLHL33A6NCF5 533 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 KCNK1O00180 336 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 CD48P09326 243 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 SLC35G4P0C7Q5 338 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 COX6B1P14854 86 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 POLR2CP19387 275 aaPredicted RBP9.83□□□□□ -0.84
TRIM28-210ENST00000597618 NDUFS1P28331 727 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 PBLDP30039 288 aaPredicted RBP9.83□□□□□ -0.84
TRIM28-210ENST00000597618 CTSCP53634 463 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 IFI35P80217 286 aaPredicted RBP9.83□□□□□ -0.84
TRIM28-210ENST00000597618 CDC16Q13042 620 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 AIMP2Q13155 320 aaKnown RBP9.83□□□□□ -0.84
TRIM28-210ENST00000597618 DPYSL3Q14195 570 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 ZNF169Q14929 603 aaPredicted RBP9.83□□□□□ -0.84
TRIM28-210ENST00000597618 HIF1AQ16665 826 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 LDLRAP1Q5SW96 308 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 IRAK1BP1Q5VVH5 260 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 MLIPQ5VWP3 458 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 CCDC70Q6NSX1 233 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 DUS1LQ6P1R4 473 aaKnown RBP9.83□□□□□ -0.84
TRIM28-210ENST00000597618 FAM180AQ6UWF9 173 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 PPP1R32Q7Z5V6 425 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 GPR135Q8IZ08 494 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 NXPE1Q8N323 547 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 RASGEF1AQ8N9B8 481 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 CCNYQ8ND76 341 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 DDHD1Q8NEL9 900 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 OR2Y1Q8NGV0 311 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 PROKR1Q8TCW9 393 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 DTX3LQ8TDB6 740 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms