RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 TRBV23OR9-2A0A075B6M9 112 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 CASC3O15234 703 aaKnown RBP14.73□□□□□ -0.05
TRIM28-207ENST00000597136 ZNF7P17097 686 aaPredicted RBP14.73□□□□□ -0.05
TRIM28-207ENST00000597136 SPRP35270 261 aaPredicted RBP14.73□□□□□ -0.05
TRIM28-207ENST00000597136 ACTR1BP42025 376 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 SERPINB9P50453 376 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 ACTR1AP61163 376 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 SIM1P81133 766 aaPredicted RBP14.73□□□□□ -0.05
TRIM28-207ENST00000597136 ILF3Q12906 894 aaKnown RBP eCLIP14.73□□□□□ -0.05
TRIM28-207ENST00000597136 PPM1JQ5JR12 505 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 C6orf132Q5T0Z8 1188 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 SLC35F3Q8IY50 421 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 COPS8Q99627 209 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 DPEP2Q9H4A9 486 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 KLC4Q9NSK0 619 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 GULP1Q9UBP9 304 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 LGALS13Q9UHV8 139 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 DNAJC16Q9Y2G8 782 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 CRYL1Q9Y2S2 319 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 PRSS21Q9Y6M0 314 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 HMX2A2RU54 273 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 KMOO15229 486 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 POP7O75817 140 aaKnown RBP14.73□□□□□ -0.05
TRIM28-207ENST00000597136 ALPPL2P10696 532 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 LIMK2P53671 638 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 ADARP55265 1226 aaKnown RBP14.73□□□□□ -0.05
TRIM28-207ENST00000597136 ITIH4Q14624 930 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 INAVAQ3KP66 663 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 CCDC157Q569K6 752 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 ZCCHC8Q6NZY4 707 aaKnown RBP14.73□□□□□ -0.05
TRIM28-207ENST00000597136 OGFOD3Q6PK18 319 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 LVRNQ6Q4G3 990 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 CROCCP2Q86T23 111 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 TRAPPC5Q8IUR0 188 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 SDR16C5Q8N3Y7 309 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 RIBC1Q8N443 379 aaPredicted RBP14.73□□□□□ -0.05
TRIM28-207ENST00000597136 ATXN7L3BQ96GX2 97 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 VPS39Q96JC1 886 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 BIRC8Q96P09 236 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 CDC6Q99741 560 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 DUSP23Q9BVJ7 150 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 GSDMCQ9BYG8 508 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 CEP295Q9C0D2 2601 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 TBC1D29Q9UFV1 150 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 TBK1Q9UHD2 729 aa14.73□□□□□ -0.05
TRIM28-207ENST00000597136 UBA6A0AVT1 1052 aaPredicted RBP14.72□□□□□ -0.05
TRIM28-207ENST00000597136 B4DGG1 531 aa14.72□□□□□ -0.05
TRIM28-207ENST00000597136 GPR89AB7ZAQ6 455 aa14.72□□□□□ -0.05
TRIM28-207ENST00000597136 PRMT5O14744 637 aaPredicted RBP14.72□□□□□ -0.05
TRIM28-207ENST00000597136 TNFSF14O43557 240 aa14.72□□□□□ -0.05
TRIM28-207ENST00000597136 NOBOXO60393 691 aa14.72□□□□□ -0.05
TRIM28-207ENST00000597136 KRT38O76015 456 aa14.72□□□□□ -0.05
TRIM28-207ENST00000597136 ITGA2BP08514 1039 aa14.72□□□□□ -0.05
TRIM28-207ENST00000597136 GPR89BP0CG08 455 aa14.72□□□□□ -0.05
TRIM28-207ENST00000597136 ATP1B2P14415 290 aaPredicted RBP14.72□□□□□ -0.05
TRIM28-207ENST00000597136 CNTFP26441 200 aa14.72□□□□□ -0.05
TRIM28-207ENST00000597136 ILF2Q12905 390 aaKnown RBP14.72□□□□□ -0.05
TRIM28-207ENST00000597136 GTF2H3Q13889 308 aa14.72□□□□□ -0.05
TRIM28-207ENST00000597136 LGSNQ5TDP6 509 aa14.72□□□□□ -0.05
TRIM28-207ENST00000597136 MROH9Q5TGP6 573 aa14.72□□□□□ -0.05
TRIM28-207ENST00000597136 ZNF549Q6P9A3 640 aa14.72□□□□□ -0.05
TRIM28-207ENST00000597136 XKR5Q6UX68 686 aa14.72□□□□□ -0.05
TRIM28-207ENST00000597136 TAOK1Q7L7X3 1001 aa14.72□□□□□ -0.05
TRIM28-207ENST00000597136 GLRX5Q86SX6 157 aa14.72□□□□□ -0.05
TRIM28-207ENST00000597136 CYP4X1Q8N118 509 aa14.72□□□□□ -0.05
TRIM28-207ENST00000597136 NAGSQ8N159 534 aa14.72□□□□□ -0.05
TRIM28-207ENST00000597136 FAM181AQ8N9Y4 354 aa14.72□□□□□ -0.05
TRIM28-207ENST00000597136 KYQ8NBH2 561 aa14.72□□□□□ -0.05
TRIM28-207ENST00000597136 GPR156Q8NFN8 814 aa14.72□□□□□ -0.05
TRIM28-207ENST00000597136 DCUN1D1Q96GG9 259 aa14.72□□□□□ -0.05
TRIM28-207ENST00000597136 P2RY12Q9H244 342 aa14.72□□□□□ -0.05
TRIM28-207ENST00000597136 CORO1CQ9ULV4 474 aaPredicted RBP14.72□□□□□ -0.05
TRIM28-207ENST00000597136 MTO1Q9Y2Z2 717 aaKnown RBP14.72□□□□□ -0.05
TRIM28-207ENST00000597136 IQANK1A0A1B0GTG1 560 aa14.71□□□□□ -0.05
TRIM28-207ENST00000597136 CPED1A4D0V7 1026 aa14.71□□□□□ -0.05
TRIM28-207ENST00000597136 PRR19A6NJB7 356 aa14.71□□□□□ -0.05
TRIM28-207ENST00000597136 SNX2O60749 519 aa14.71□□□□□ -0.05
TRIM28-207ENST00000597136 KRT37O76014 449 aa14.71□□□□□ -0.05
TRIM28-207ENST00000597136 SNRPAP09012 282 aaKnown RBP14.71□□□□□ -0.05
TRIM28-207ENST00000597136 MYZAPP0CAP1 466 aa14.71□□□□□ -0.05
TRIM28-207ENST00000597136 CKMT1AP12532 417 aa14.71□□□□□ -0.05
TRIM28-207ENST00000597136 CKMT2P17540 419 aa14.71□□□□□ -0.05
TRIM28-207ENST00000597136 RPS3P23396 243 aaKnown RBP eCLIP14.71□□□□□ -0.052e-9■■■□□ 17.2
TRIM28-207ENST00000597136 PBLDP30039 288 aaPredicted RBP14.71□□□□□ -0.05
TRIM28-207ENST00000597136 FMO4P31512 558 aa14.71□□□□□ -0.05
TRIM28-207ENST00000597136 NSG1P42857 185 aa14.71□□□□□ -0.05
TRIM28-207ENST00000597136 DAB2P98082 770 aa14.71□□□□□ -0.05
TRIM28-207ENST00000597136 BMPR2Q13873 1038 aa14.71□□□□□ -0.05
TRIM28-207ENST00000597136 LRP8Q14114 963 aa14.71□□□□□ -0.05
TRIM28-207ENST00000597136 TMED2Q15363 201 aa14.71□□□□□ -0.05
TRIM28-207ENST00000597136 INSCQ1MX18 579 aa14.71□□□□□ -0.05
TRIM28-207ENST00000597136 N4BP2L1Q5TBK1 243 aaPredicted RBP14.71□□□□□ -0.05
TRIM28-207ENST00000597136 GUSBP11Q6P575 273 aa14.71□□□□□ -0.05
TRIM28-207ENST00000597136 FAM83HQ6ZRV2 1179 aaPredicted RBP14.71□□□□□ -0.05
TRIM28-207ENST00000597136 DGLUCYQ7Z3D6 616 aa14.71□□□□□ -0.05
TRIM28-207ENST00000597136 LILRA3Q8N6C8 439 aaPredicted RBP14.71□□□□□ -0.05
TRIM28-207ENST00000597136 ACVR1CQ8NER5 493 aa14.71□□□□□ -0.05
TRIM28-207ENST00000597136 ZDHHC1Q8WTX9 485 aa14.71□□□□□ -0.05
TRIM28-207ENST00000597136 HEXDCQ8WVB3 486 aa14.71□□□□□ -0.05
TRIM28-207ENST00000597136 GPR22Q99680 433 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms