RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 KLHL35Q6PF15 583 aa19.83■□□□□ 0.77
CLK3-225ENST00000569063 CEACAM20Q6UY09 585 aa19.83■□□□□ 0.77
CLK3-225ENST00000569063 LILRA3Q8N6C8 439 aaPredicted RBP19.83■□□□□ 0.77
CLK3-225ENST00000569063 SPDYE1Q8NFV5 336 aaPredicted RBP19.83■□□□□ 0.77
CLK3-225ENST00000569063 NKD1Q969G9 470 aa19.83■□□□□ 0.77
CLK3-225ENST00000569063 C12orf66Q96MD2 445 aa19.83■□□□□ 0.77
CLK3-225ENST00000569063 SPRY4Q9C004 299 aa19.83■□□□□ 0.77
CLK3-225ENST00000569063 VPS37BQ9H9H4 285 aa19.83■□□□□ 0.77
CLK3-225ENST00000569063 EIF2B3Q9NR50 452 aaKnown RBP19.83■□□□□ 0.77
CLK3-225ENST00000569063 FAM8A1Q9UBU6 413 aa19.83■□□□□ 0.77
CLK3-225ENST00000569063 IGSF10Q6WRI0 2623 aa19.83■□□□□ 0.76
CLK3-225ENST00000569063 CCDC78A2IDD5 438 aa19.82■□□□□ 0.76
CLK3-225ENST00000569063 CCDC162PA2VCL2 907 aa19.82■□□□□ 0.76
CLK3-225ENST00000569063 POLBP06746 335 aa19.82■□□□□ 0.76
CLK3-225ENST00000569063 FOXN2P32314 431 aa19.82■□□□□ 0.76
CLK3-225ENST00000569063 ACVR1Q04771 509 aa19.82■□□□□ 0.76
CLK3-225ENST00000569063 ITIH4Q14624 930 aa19.82■□□□□ 0.76
CLK3-225ENST00000569063 TSTD2Q5T7W7 516 aa19.82■□□□□ 0.76
CLK3-225ENST00000569063 PACS1Q6VY07 963 aa19.82■□□□□ 0.76
CLK3-225ENST00000569063 NLRP9Q7RTR0 991 aa19.82■□□□□ 0.76
CLK3-225ENST00000569063 CLDN19Q8N6F1 224 aa19.82■□□□□ 0.76
CLK3-225ENST00000569063 KLHL6Q8WZ60 621 aa19.82■□□□□ 0.76
CLK3-225ENST00000569063 WBP1Q96G27 269 aa19.82■□□□□ 0.76
CLK3-225ENST00000569063 RMDN2Q96LZ7 410 aa19.82■□□□□ 0.76
CLK3-225ENST00000569063 CTRCQ99895 268 aa19.82■□□□□ 0.76
CLK3-225ENST00000569063 KIR3DX1Q9H7L2 352 aa19.82■□□□□ 0.76
CLK3-225ENST00000569063 COG4Q9H9E3 785 aa19.82■□□□□ 0.76
CLK3-225ENST00000569063 WDR70Q9NW82 654 aa19.82■□□□□ 0.76
CLK3-225ENST00000569063 SEMA5BQ9P283 1151 aa19.82■□□□□ 0.76
CLK3-225ENST00000569063 JRKLQ9Y4A0 524 aa19.82■□□□□ 0.76
CLK3-225ENST00000569063 COLEC10Q9Y6Z7 277 aa19.82■□□□□ 0.76
CLK3-225ENST00000569063 MGAQ8IWI9 3026 aa19.82■□□□□ 0.76
CLK3-225ENST00000569063 CACNA1GO43497 2377 aa19.81■□□□□ 0.76
CLK3-225ENST00000569063 OR51F1A6NGY5 319 aa19.81■□□□□ 0.76
CLK3-225ENST00000569063 POLR1CO15160 346 aaPredicted RBP19.81■□□□□ 0.76
CLK3-225ENST00000569063 RASSF9O75901 435 aa19.81■□□□□ 0.76
CLK3-225ENST00000569063 NSG1P42857 185 aa19.81■□□□□ 0.76
CLK3-225ENST00000569063 KCNJ1P48048 391 aa19.81■□□□□ 0.76
CLK3-225ENST00000569063 ATP1A2P50993 1020 aa19.81■□□□□ 0.76
CLK3-225ENST00000569063 PLCL1Q15111 1095 aa19.81■□□□□ 0.76
CLK3-225ENST00000569063 IRGCQ6NXR0 463 aa19.81■□□□□ 0.76
CLK3-225ENST00000569063 DUS1LQ6P1R4 473 aaKnown RBP19.81■□□□□ 0.76
CLK3-225ENST00000569063 PCSK4Q6UW60 755 aa19.81■□□□□ 0.76
CLK3-225ENST00000569063 GSTA5Q7RTV2 222 aa19.81■□□□□ 0.76
CLK3-225ENST00000569063 VASH2Q86V25 355 aa19.81■□□□□ 0.76
CLK3-225ENST00000569063 JPH3Q8WXH2 748 aaPredicted RBP19.81■□□□□ 0.76
CLK3-225ENST00000569063 TTC9Q92623 222 aa19.81■□□□□ 0.76
CLK3-225ENST00000569063 PEX13Q92968 403 aa19.81■□□□□ 0.76
CLK3-225ENST00000569063 HDAC10Q969S8 669 aa19.81■□□□□ 0.76
CLK3-225ENST00000569063 SGSM3Q96HU1 749 aa19.81■□□□□ 0.76
CLK3-225ENST00000569063 OR52A5Q9H2C5 316 aa19.81■□□□□ 0.76
CLK3-225ENST00000569063 APMAPQ9HDC9 416 aa19.81■□□□□ 0.76
CLK3-225ENST00000569063 SMARCAL1Q9NZC9 954 aa19.81■□□□□ 0.76
CLK3-225ENST00000569063 SLC2A6Q9UGQ3 507 aa19.81■□□□□ 0.76
CLK3-225ENST00000569063 SLC24A2Q9UI40 661 aa19.81■□□□□ 0.76
CLK3-225ENST00000569063 PILRAQ9UKJ1 303 aa19.81■□□□□ 0.76
CLK3-225ENST00000569063 TCAF1Q9Y4C2 921 aa19.81■□□□□ 0.76
CLK3-225ENST00000569063 HEBP2Q9Y5Z4 205 aa19.81■□□□□ 0.76
CLK3-225ENST00000569063 SDK2Q58EX2 2172 aa19.81■□□□□ 0.76
CLK3-225ENST00000569063 OR5K3A6NET4 321 aa19.8■□□□□ 0.76
CLK3-225ENST00000569063 QSOX1O00391 747 aa19.8■□□□□ 0.76
CLK3-225ENST00000569063 KIF1CO43896 1103 aaKnown RBP19.8■□□□□ 0.76
CLK3-225ENST00000569063 NDUFS1P28331 727 aa19.8■□□□□ 0.76
CLK3-225ENST00000569063 CD151P48509 253 aa19.8■□□□□ 0.76
CLK3-225ENST00000569063 RPA4Q13156 261 aa19.8■□□□□ 0.76
CLK3-225ENST00000569063 GSE1Q14687 1217 aa19.8■□□□□ 0.76
CLK3-225ENST00000569063 CACHD1Q5VU97 1274 aa19.8■□□□□ 0.76
CLK3-225ENST00000569063 LYPLAL1Q5VWZ2 237 aa19.8■□□□□ 0.76
CLK3-225ENST00000569063 AFTPHQ6ULP2 937 aa19.8■□□□□ 0.76
CLK3-225ENST00000569063 FAM92BQ6ZTR7 304 aa19.8■□□□□ 0.76
CLK3-225ENST00000569063 PRELID2Q8N945 189 aa19.8■□□□□ 0.76
CLK3-225ENST00000569063 SLC39A7Q92504 469 aa19.8■□□□□ 0.76
CLK3-225ENST00000569063 ZNF778Q96MU6 729 aa19.8■□□□□ 0.76
CLK3-225ENST00000569063 GOLGA6L3A6NEY3 463 aa19.79■□□□□ 0.76
CLK3-225ENST00000569063 EIF4E1BA6NMX2 242 aaKnown RBP19.79■□□□□ 0.76
CLK3-225ENST00000569063 AP3B1O00203 1094 aa19.79■□□□□ 0.76
CLK3-225ENST00000569063 GOT2P00505 430 aaKnown RBP19.79■□□□□ 0.76
CLK3-225ENST00000569063 NELFEP18615 380 aaKnown RBP19.79■□□□□ 0.76
CLK3-225ENST00000569063 SEPHS1P49903 392 aa19.79■□□□□ 0.76
CLK3-225ENST00000569063 PPP1CAP62136 330 aa19.79■□□□□ 0.76
CLK3-225ENST00000569063 BASP1P80723 227 aaKnown RBP19.79■□□□□ 0.76
CLK3-225ENST00000569063 IL11RAQ14626 422 aa19.79■□□□□ 0.76
CLK3-225ENST00000569063 ZNF449Q6P9G9 518 aa19.79■□□□□ 0.76
CLK3-225ENST00000569063 CERS6Q6ZMG9 384 aa19.79■□□□□ 0.76
CLK3-225ENST00000569063 RASGEF1CQ8N431 466 aa19.79■□□□□ 0.76
CLK3-225ENST00000569063 PPHLN1Q8NEY8 458 aaKnown RBP19.79■□□□□ 0.76
CLK3-225ENST00000569063 UBXN4Q92575 508 aa19.79■□□□□ 0.76
CLK3-225ENST00000569063 TBRG4Q969Z0 631 aaKnown RBP eCLIP19.79■□□□□ 0.76
CLK3-225ENST00000569063 PBKQ96KB5 322 aa19.79■□□□□ 0.76
CLK3-225ENST00000569063 CD180Q99467 661 aa19.79■□□□□ 0.76
CLK3-225ENST00000569063 TTC1Q99614 292 aa19.79■□□□□ 0.76
CLK3-225ENST00000569063 TTC7AQ9ULT0 858 aaPredicted RBP19.79■□□□□ 0.76
CLK3-225ENST00000569063 TMEM184BQ9Y519 407 aaPredicted RBP19.79■□□□□ 0.76
CLK3-225ENST00000569063 PRSS21Q9Y6M0 314 aa19.79■□□□□ 0.76
CLK3-225ENST00000569063 RAD1O60671 282 aa19.78■□□□□ 0.76
CLK3-225ENST00000569063 MAP4P27816 1152 aaKnown RBP19.78■□□□□ 0.76
CLK3-225ENST00000569063 SH3BP2P78314 561 aa19.78■□□□□ 0.76
CLK3-225ENST00000569063 FOXM1Q08050 763 aa19.78■□□□□ 0.76
CLK3-225ENST00000569063 KRT33BQ14525 404 aa19.78■□□□□ 0.76
CLK3-225ENST00000569063 PCID2Q5JVF3 399 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms