RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 PRMT9Q6P2P2 845 aa19.93■□□□□ 0.78
CLN3-230ENST00000568076 MBOAT1Q6ZNC8 495 aa19.93■□□□□ 0.78
CLN3-230ENST00000568076 SPRED2Q7Z698 418 aa19.93■□□□□ 0.78
CLN3-230ENST00000568076 ADCY4Q8NFM4 1077 aa19.93■□□□□ 0.78
CLN3-230ENST00000568076 SPPL3Q8TCT6 385 aa19.93■□□□□ 0.78
CLN3-230ENST00000568076 PROKR1Q8TCW9 393 aa19.93■□□□□ 0.78
CLN3-230ENST00000568076 SP7Q8TDD2 431 aaPredicted RBP19.93■□□□□ 0.78
CLN3-230ENST00000568076 PBXIP1Q96AQ6 731 aa19.93■□□□□ 0.78
CLN3-230ENST00000568076 DUS3LQ96G46 650 aaKnown RBP19.93■□□□□ 0.78
CLN3-230ENST00000568076 ZSWIM3Q96MP5 696 aa19.93■□□□□ 0.78
CLN3-230ENST00000568076 CD244Q9BZW8 370 aa19.93■□□□□ 0.78
CLN3-230ENST00000568076 VCXQ9H320 206 aa19.93■□□□□ 0.78
CLN3-230ENST00000568076 GID8Q9NWU2 228 aa19.93■□□□□ 0.78
CLN3-230ENST00000568076 ZMYM5Q9UJ78 669 aa19.93■□□□□ 0.78
CLN3-230ENST00000568076 LZTS1Q9Y250 596 aa19.93■□□□□ 0.78
CLN3-230ENST00000568076 NOTCH4Q99466 2003 aa19.93■□□□□ 0.78
CLN3-230ENST00000568076 PIKFYVEQ9Y2I7 2098 aa19.93■□□□□ 0.78
CLN3-230ENST00000568076 LSM1O15116 133 aaKnown RBP19.92■□□□□ 0.78
CLN3-230ENST00000568076 CCR7P32248 378 aa19.92■□□□□ 0.78
CLN3-230ENST00000568076 SPINT3P49223 89 aa19.92■□□□□ 0.78
CLN3-230ENST00000568076 CREB5Q02930 508 aa19.92■□□□□ 0.78
CLN3-230ENST00000568076 FOLH1Q04609 750 aa19.92■□□□□ 0.78
CLN3-230ENST00000568076 SULT1C3Q6IMI6 304 aa19.92■□□□□ 0.78
CLN3-230ENST00000568076 FBXO46Q6PJ61 603 aaPredicted RBP19.92■□□□□ 0.78
CLN3-230ENST00000568076 MILR1Q7Z6M3 343 aa19.92■□□□□ 0.78
CLN3-230ENST00000568076 DHFR2Q86XF0 187 aa19.92■□□□□ 0.78
CLN3-230ENST00000568076 UBTD2Q8WUN7 234 aa19.92■□□□□ 0.78
CLN3-230ENST00000568076 HEBP1Q9NRV9 189 aa19.92■□□□□ 0.78
CLN3-230ENST00000568076 ZIM2Q9NZV7 527 aa19.92■□□□□ 0.78
CLN3-230ENST00000568076 CD84Q9UIB8 345 aa19.92■□□□□ 0.78
CLN3-230ENST00000568076 PCDHA9Q9Y5H5 950 aa19.92■□□□□ 0.78
CLN3-230ENST00000568076 WASH3PC4AMC7 463 aa19.92■□□□□ 0.78
CLN3-230ENST00000568076 EEDO75530 441 aaKnown RBP19.92■□□□□ 0.78
CLN3-230ENST00000568076 FGF19O95750 216 aa19.92■□□□□ 0.78
CLN3-230ENST00000568076 EPCAMP16422 314 aa19.92■□□□□ 0.78
CLN3-230ENST00000568076 POLR2JP52435 117 aaKnown RBP19.92■□□□□ 0.78
CLN3-230ENST00000568076 TLR1Q15399 786 aa19.92■□□□□ 0.78
CLN3-230ENST00000568076 MAP7D1Q3KQU3 841 aa19.92■□□□□ 0.78
CLN3-230ENST00000568076 ARHGAP15Q53QZ3 475 aa19.92■□□□□ 0.78
CLN3-230ENST00000568076 GDPD4Q6W3E5 623 aa19.92■□□□□ 0.78
CLN3-230ENST00000568076 SORCS1Q8WY21 1168 aa19.92■□□□□ 0.78
CLN3-230ENST00000568076 BADQ92934 168 aa19.92■□□□□ 0.78
CLN3-230ENST00000568076 RDH14Q9HBH5 336 aa19.92■□□□□ 0.78
CLN3-230ENST00000568076 KCTD5Q9NXV2 234 aa19.92■□□□□ 0.78
CLN3-230ENST00000568076 WWOXQ9NZC7 414 aa19.92■□□□□ 0.78
CLN3-230ENST00000568076 CCL27Q9Y4X3 112 aa19.92■□□□□ 0.78
CLN3-230ENST00000568076 WNT6Q9Y6F9 365 aa19.92■□□□□ 0.78
CLN3-230ENST00000568076 CHD7Q9P2D1 2997 aa19.91■□□□□ 0.78
CLN3-230ENST00000568076 HSD17B1P14061 328 aa19.91■□□□□ 0.78
CLN3-230ENST00000568076 SLC7A1P30825 629 aa19.91■□□□□ 0.78
CLN3-230ENST00000568076 IRS1P35568 1242 aa19.91■□□□□ 0.78
CLN3-230ENST00000568076 FOXM1Q08050 763 aa19.91■□□□□ 0.78
CLN3-230ENST00000568076 TTLL9Q3SXZ7 439 aa19.91■□□□□ 0.78
CLN3-230ENST00000568076 ELMSAN1Q6PJG2 1045 aa19.91■□□□□ 0.78
CLN3-230ENST00000568076 NAT16Q8N8M0 369 aa19.91■□□□□ 0.78
CLN3-230ENST00000568076 PHC3Q8NDX5 983 aa19.91■□□□□ 0.78
CLN3-230ENST00000568076 LRTOMTQ8WZ04 291 aa19.91■□□□□ 0.78
CLN3-230ENST00000568076 RAD9AQ99638 391 aa19.91■□□□□ 0.78
CLN3-230ENST00000568076 ACTL8Q9H568 366 aa19.91■□□□□ 0.78
CLN3-230ENST00000568076 SLAMF8Q9P0V8 285 aa19.91■□□□□ 0.78
CLN3-230ENST00000568076 OPTCQ9UBM4 332 aa19.91■□□□□ 0.78
CLN3-230ENST00000568076 PDE4DIPQ5VU43 2346 aa19.9■□□□□ 0.78
CLN3-230ENST00000568076 CCDC154A6NI56 674 aa19.9■□□□□ 0.78
CLN3-230ENST00000568076 EMX2Q04743 252 aa19.9■□□□□ 0.78
CLN3-230ENST00000568076 NFYCQ13952 458 aa19.9■□□□□ 0.78
CLN3-230ENST00000568076 CRY1Q16526 586 aa19.9■□□□□ 0.78
CLN3-230ENST00000568076 TIGD2Q4W5G0 525 aa19.9■□□□□ 0.78
CLN3-230ENST00000568076 RFTN2Q52LD8 501 aaPredicted RBP19.9■□□□□ 0.78
CLN3-230ENST00000568076 PRSS36Q5K4E3 855 aa19.9■□□□□ 0.78
CLN3-230ENST00000568076 KIAA0907Q7Z7F0 614 aaPredicted RBP19.9■□□□□ 0.78
CLN3-230ENST00000568076 FAM110BQ8TC76 370 aa19.9■□□□□ 0.78
CLN3-230ENST00000568076 FRS2Q8WU20 508 aa19.9■□□□□ 0.78
CLN3-230ENST00000568076 CYB5D2Q8WUJ1 264 aa19.9■□□□□ 0.78
CLN3-230ENST00000568076 TMEM125Q96AQ2 219 aa19.9■□□□□ 0.78
CLN3-230ENST00000568076 ERVW-1Q9UQF0 538 aa19.9■□□□□ 0.78
CLN3-230ENST00000568076 FAM234BA2RU67 622 aa19.9■□□□□ 0.78
CLN3-230ENST00000568076 ZNF839A8K0R7 811 aa19.9■□□□□ 0.78
CLN3-230ENST00000568076 TXNDC9O14530 226 aa19.9■□□□□ 0.78
CLN3-230ENST00000568076 CBSLP0DN79 551 aa19.9■□□□□ 0.78
CLN3-230ENST00000568076 HSPA8P11142 646 aaKnown RBP19.9■□□□□ 0.78
CLN3-230ENST00000568076 HMOX2P30519 316 aa19.9■□□□□ 0.78
CLN3-230ENST00000568076 CBSP35520 551 aa19.9■□□□□ 0.78
CLN3-230ENST00000568076 GRIA3P42263 894 aa19.9■□□□□ 0.78
CLN3-230ENST00000568076 PIK3CGP48736 1102 aa19.9■□□□□ 0.78
CLN3-230ENST00000568076 CAMK1Q14012 370 aa19.9■□□□□ 0.78
CLN3-230ENST00000568076 NR6A1Q15406 480 aa19.9■□□□□ 0.78
CLN3-230ENST00000568076 RABL3Q5HYI8 236 aa19.9■□□□□ 0.78
CLN3-230ENST00000568076 TMEM240Q5SV17 173 aa19.9■□□□□ 0.78
CLN3-230ENST00000568076 ZFAND4Q86XD8 727 aa19.9■□□□□ 0.78
CLN3-230ENST00000568076 CATSPER1Q8NEC5 780 aa19.9■□□□□ 0.78
CLN3-230ENST00000568076 OR2T34Q8NGX1 318 aa19.9■□□□□ 0.78
CLN3-230ENST00000568076 OR2T3Q8NH03 318 aa19.9■□□□□ 0.78
CLN3-230ENST00000568076 DNAJB14Q8TBM8 379 aa19.9■□□□□ 0.78
CLN3-230ENST00000568076 NUDT8Q8WV74 236 aa19.9■□□□□ 0.78
CLN3-230ENST00000568076 MRGPRX3Q96LB0 322 aa19.9■□□□□ 0.78
CLN3-230ENST00000568076 SEMA6AQ9H2E6 1030 aa19.9■□□□□ 0.78
CLN3-230ENST00000568076 GEMIN8Q9NWZ8 242 aaKnown RBP19.9■□□□□ 0.78
CLN3-230ENST00000568076 EGFL7Q9UHF1 273 aa19.9■□□□□ 0.78
CLN3-230ENST00000568076 TTC34A8MYJ7 566 aa19.89■□□□□ 0.77
CLN3-230ENST00000568076 K7EPI3 171 aa19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms