RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 PREPP48147 710 aa30■■■□□ 2.39
CTCF-203ENST00000566078 GSTM4Q03013 218 aa30■■■□□ 2.39
CTCF-203ENST00000566078 MAMSTRQ6ZN01 415 aa30■■■□□ 2.39
CTCF-203ENST00000566078 FAM47EQ6ZV65 393 aa30■■■□□ 2.39
CTCF-203ENST00000566078 GLMNQ92990 594 aa30■■■□□ 2.39
CTCF-203ENST00000566078 CYP4F12Q9HCS2 524 aa30■■■□□ 2.39
CTCF-203ENST00000566078 HS3ST3A1Q9Y663 406 aa30■■■□□ 2.39
CTCF-203ENST00000566078 TP53BP1Q12888 1972 aaPredicted RBP29.99■■■□□ 2.39
CTCF-203ENST00000566078 SYCE1LA8MT33 242 aa29.99■■■□□ 2.39
CTCF-203ENST00000566078 GRID2O43424 1007 aa29.99■■■□□ 2.39
CTCF-203ENST00000566078 SLCO2B1O94956 709 aa29.99■■■□□ 2.39
CTCF-203ENST00000566078 CEACAM5P06731 702 aa29.99■■■□□ 2.39
CTCF-203ENST00000566078 NUDT1P36639 197 aa29.99■■■□□ 2.39
CTCF-203ENST00000566078 NFATC4Q14934 902 aa29.99■■■□□ 2.39
CTCF-203ENST00000566078 CES4AQ5XG92 561 aa29.99■■■□□ 2.39
CTCF-203ENST00000566078 SBSNQ6UWP8 590 aa29.99■■■□□ 2.39
CTCF-203ENST00000566078 FRA10AC1Q70Z53 315 aa29.99■■■□□ 2.39
CTCF-203ENST00000566078 PHF6Q8IWS0 365 aaKnown RBP eCLIP29.99■■■□□ 2.39
CTCF-203ENST00000566078 HM13Q8TCT9 377 aa29.99■■■□□ 2.39
CTCF-203ENST00000566078 FAM107BQ9H098 131 aa29.99■■■□□ 2.39
CTCF-203ENST00000566078 COG4Q9H9E3 785 aa29.99■■■□□ 2.39
CTCF-203ENST00000566078 GULP1Q9UBP9 304 aa29.99■■■□□ 2.39
CTCF-203ENST00000566078 ZNHIT2Q9UHR6 403 aa29.99■■■□□ 2.39
CTCF-203ENST00000566078 ADAMTS6Q9UKP5 1117 aa29.99■■■□□ 2.39
CTCF-203ENST00000566078 LIN7AO14910 233 aaPredicted RBP29.98■■■□□ 2.39
CTCF-203ENST00000566078 SERPINE1P05121 402 aa29.98■■■□□ 2.39
CTCF-203ENST00000566078 TPBGLP0DKB5 382 aa29.98■■■□□ 2.39
CTCF-203ENST00000566078 PFN3P60673 137 aa29.98■■■□□ 2.39
CTCF-203ENST00000566078 ARHGAP8P85298 464 aa29.98■■■□□ 2.39
CTCF-203ENST00000566078 BST1Q10588 318 aa29.98■■■□□ 2.39
CTCF-203ENST00000566078 NEK10Q6ZWH5 1172 aa29.98■■■□□ 2.39
CTCF-203ENST00000566078 GPSM1Q86YR5 675 aa29.98■■■□□ 2.39
CTCF-203ENST00000566078 CFAP206Q8IYR0 622 aa29.98■■■□□ 2.39
CTCF-203ENST00000566078 OR2L2Q8NH16 312 aa29.98■■■□□ 2.39
CTCF-203ENST00000566078 CCDC126Q96EE4 140 aa29.98■■■□□ 2.39
CTCF-203ENST00000566078 SLCO1B3Q9NPD5 702 aa29.98■■■□□ 2.39
CTCF-203ENST00000566078 MOSPD1Q9UJG1 213 aa29.98■■■□□ 2.39
CTCF-203ENST00000566078 C17orf113A0A1B0GUU1 675 aa29.97■■■□□ 2.39
CTCF-203ENST00000566078 MGAT4DA6NG13 374 aa29.97■■■□□ 2.39
CTCF-203ENST00000566078 KMOO15229 486 aa29.97■■■□□ 2.39
CTCF-203ENST00000566078 H2AFYO75367 372 aaKnown RBP29.97■■■□□ 2.39
CTCF-203ENST00000566078 PRKAA2P54646 552 aa29.97■■■□□ 2.39
CTCF-203ENST00000566078 GABPB1Q06547 395 aaPredicted RBP29.97■■■□□ 2.39
CTCF-203ENST00000566078 DMWDQ09019 674 aa29.97■■■□□ 2.39
CTCF-203ENST00000566078 STX3Q13277 289 aa29.97■■■□□ 2.39
CTCF-203ENST00000566078 OXR1Q8N573 874 aa29.97■■■□□ 2.39
CTCF-203ENST00000566078 RMI1Q9H9A7 625 aa29.97■■■□□ 2.39
CTCF-203ENST00000566078 FGFR1OP2Q9NVK5 253 aa29.97■■■□□ 2.39
CTCF-203ENST00000566078 NCKIPSDQ9NZQ3 722 aa29.97■■■□□ 2.39
CTCF-203ENST00000566078 THADAQ6YHU6 1953 aa29.97■■■□□ 2.39
CTCF-203ENST00000566078 A0A1W2PPC4 97 aa29.96■■■□□ 2.39
CTCF-203ENST00000566078 TMEM221A6NGB7 291 aa29.96■■■□□ 2.39
CTCF-203ENST00000566078 M0R296 226 aa29.96■■■□□ 2.39
CTCF-203ENST00000566078 IPO13O94829 963 aaKnown RBP29.96■■■□□ 2.39
CTCF-203ENST00000566078 MTHFD2P13995 350 aa29.96■■■□□ 2.39
CTCF-203ENST00000566078 GFAPP14136 432 aa29.96■■■□□ 2.39
CTCF-203ENST00000566078 RPL6Q02878 288 aaKnown RBP29.96■■■□□ 2.39
CTCF-203ENST00000566078 ASPHQ12797 758 aa29.96■■■□□ 2.39
CTCF-203ENST00000566078 USP39Q53GS9 565 aaKnown RBP29.96■■■□□ 2.39
CTCF-203ENST00000566078 AMZ2Q86W34 360 aa29.96■■■□□ 2.39
CTCF-203ENST00000566078 SLC22A9Q8IVM8 553 aa29.96■■■□□ 2.39
CTCF-203ENST00000566078 ABCA7Q8IZY2 2146 aa29.96■■■□□ 2.39
CTCF-203ENST00000566078 DEFB119Q8N690 84 aa29.96■■■□□ 2.39
CTCF-203ENST00000566078 PHF21BQ96EK2 531 aa29.96■■■□□ 2.39
CTCF-203ENST00000566078 PCED1AQ9H1Q7 454 aa29.96■■■□□ 2.39
CTCF-203ENST00000566078 MRPL40Q9NQ50 206 aaKnown RBP29.96■■■□□ 2.39
CTCF-203ENST00000566078 TM7SF3Q9NS93 570 aa29.96■■■□□ 2.39
CTCF-203ENST00000566078 UTP6Q9NYH9 597 aaKnown RBP29.96■■■□□ 2.39
CTCF-203ENST00000566078 NCF1BA6NI72 391 aaPredicted RBP29.96■■■□□ 2.39
CTCF-203ENST00000566078 NCF1CA8MVU1 366 aaPredicted RBP29.96■■■□□ 2.39
CTCF-203ENST00000566078 FUCA1P04066 466 aa29.96■■■□□ 2.39
CTCF-203ENST00000566078 NCF1P14598 390 aaPredicted RBP29.96■■■□□ 2.39
CTCF-203ENST00000566078 YPEL5P62699 121 aa29.96■■■□□ 2.39
CTCF-203ENST00000566078 NFKB2Q00653 900 aa29.96■■■□□ 2.39
CTCF-203ENST00000566078 NFE2L1Q14494 772 aa29.96■■■□□ 2.39
CTCF-203ENST00000566078 PPP1R3AQ16821 1122 aa29.96■■■□□ 2.39
CTCF-203ENST00000566078 TSSK4Q6SA08 328 aa29.96■■■□□ 2.39
CTCF-203ENST00000566078 XKR5Q6UX68 686 aa29.96■■■□□ 2.39
CTCF-203ENST00000566078 GALNT13Q8IUC8 556 aa29.96■■■□□ 2.39
CTCF-203ENST00000566078 SLC22A15Q8IZD6 547 aa29.96■■■□□ 2.39
CTCF-203ENST00000566078 PTGR2Q8N8N7 351 aaPredicted RBP29.96■■■□□ 2.39
CTCF-203ENST00000566078 WDR92Q96MX6 357 aa29.96■■■□□ 2.39
CTCF-203ENST00000566078 GATA5Q9BWX5 397 aaPredicted RBP29.96■■■□□ 2.39
CTCF-203ENST00000566078 FGF22Q9HCT0 170 aa29.96■■■□□ 2.39
CTCF-203ENST00000566078 SLC23A2Q9UGH3 650 aa29.96■■■□□ 2.39
CTCF-203ENST00000566078 SUFUQ9UMX1 484 aa29.96■■■□□ 2.39
CTCF-203ENST00000566078 DNMT3AQ9Y6K1 912 aaPredicted RBP29.96■■■□□ 2.39
CTCF-203ENST00000566078 FANCMQ8IYD8 2048 aa29.95■■■□□ 2.39
CTCF-203ENST00000566078 DRD4P21917 467 aa29.95■■■□□ 2.38
CTCF-203ENST00000566078 KELP23276 732 aa29.95■■■□□ 2.38
CTCF-203ENST00000566078 GRK2P25098 689 aa29.95■■■□□ 2.38
CTCF-203ENST00000566078 HTR1BP28222 390 aa29.95■■■□□ 2.38
CTCF-203ENST00000566078 HK3P52790 923 aa29.95■■■□□ 2.38
CTCF-203ENST00000566078 DNAJB13P59910 316 aa29.95■■■□□ 2.38
CTCF-203ENST00000566078 TERF2Q15554 542 aa29.95■■■□□ 2.38
CTCF-203ENST00000566078 TPRG1LQ5T0D9 272 aa29.95■■■□□ 2.38
CTCF-203ENST00000566078 ABI3BPQ7Z7G0 1075 aa29.95■■■□□ 2.38
CTCF-203ENST00000566078 FBXO39Q8N4B4 442 aa29.95■■■□□ 2.38
CTCF-203ENST00000566078 OR56A4Q8NGH8 313 aa29.95■■■□□ 2.38
CTCF-203ENST00000566078 OR6Y1Q8NGX8 325 aa29.95■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms