RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 HP1BP3Q5SSJ5 553 aaPredicted RBP16.93■□□□□ 0.3
CLN3-217ENST00000565354 GUSBP11Q6P575 273 aa16.93■□□□□ 0.3
CLN3-217ENST00000565354 ZNF449Q6P9G9 518 aa16.93■□□□□ 0.3
CLN3-217ENST00000565354 INO80CQ6PI98 192 aaPredicted RBP16.93■□□□□ 0.3
CLN3-217ENST00000565354 CENPUQ71F23 418 aa16.93■□□□□ 0.3
CLN3-217ENST00000565354 LDB1Q86U70 411 aaPredicted RBP16.93■□□□□ 0.3
CLN3-217ENST00000565354 CCNJLQ8IV13 435 aa16.93■□□□□ 0.3
CLN3-217ENST00000565354 BEND7Q8N7W2 519 aaPredicted RBP16.93■□□□□ 0.3
CLN3-217ENST00000565354 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.93■□□□□ 0.3
CLN3-217ENST00000565354 OR6C4Q8NGE1 309 aa16.93■□□□□ 0.3
CLN3-217ENST00000565354 GABPB2Q8TAK5 448 aaPredicted RBP16.93■□□□□ 0.3
CLN3-217ENST00000565354 MAPK15Q8TD08 544 aa16.93■□□□□ 0.3
CLN3-217ENST00000565354 NAT14Q8WUY8 206 aa16.93■□□□□ 0.3
CLN3-217ENST00000565354 LRRC39Q96DD0 335 aa16.93■□□□□ 0.3
CLN3-217ENST00000565354 CFAP36Q96G28 342 aa16.93■□□□□ 0.3
CLN3-217ENST00000565354 PWWP2AQ96N64 755 aa16.93■□□□□ 0.3
CLN3-217ENST00000565354 TRIM56Q9BRZ2 755 aaKnown RBP16.93■□□□□ 0.3
CLN3-217ENST00000565354 C20orf96Q9NUD7 363 aaPredicted RBP16.93■□□□□ 0.3
CLN3-217ENST00000565354 SLC23A2Q9UGH3 650 aa16.93■□□□□ 0.3
CLN3-217ENST00000565354 SATB2Q9UPW6 733 aa16.93■□□□□ 0.3
CLN3-217ENST00000565354 CHMP2BQ9UQN3 213 aa16.93■□□□□ 0.3
CLN3-217ENST00000565354 ST14Q9Y5Y6 855 aa16.93■□□□□ 0.3
CLN3-217ENST00000565354 U3KQA8 63 aa16.93■□□□□ 0.3
CLN3-217ENST00000565354 IGLV3-16A0A075B6K0 115 aa16.92■□□□□ 0.3
CLN3-217ENST00000565354 TRBV23OR9-2A0A075B6M9 112 aa16.92■□□□□ 0.3
CLN3-217ENST00000565354 UBA6A0AVT1 1052 aaPredicted RBP16.92■□□□□ 0.3
CLN3-217ENST00000565354 KLHL33A6NCF5 533 aa16.92■□□□□ 0.3
CLN3-217ENST00000565354 ELK3P41970 407 aa16.92■□□□□ 0.3
CLN3-217ENST00000565354 HALP42357 657 aa16.92■□□□□ 0.3
CLN3-217ENST00000565354 PRLHRP49683 370 aa16.92■□□□□ 0.3
CLN3-217ENST00000565354 CLCNKAP51800 687 aa16.92■□□□□ 0.3
CLN3-217ENST00000565354 MAZP56270 477 aaKnown RBP16.92■□□□□ 0.3
CLN3-217ENST00000565354 GUCY2DQ02846 1103 aa16.92■□□□□ 0.3
CLN3-217ENST00000565354 SEMA3AQ14563 771 aa16.92■□□□□ 0.3
CLN3-217ENST00000565354 ISXQ2M1V0 245 aa16.92■□□□□ 0.3
CLN3-217ENST00000565354 MSS51Q4VC12 460 aa16.92■□□□□ 0.3
CLN3-217ENST00000565354 C3orf38Q5JPI3 329 aa16.92■□□□□ 0.3
CLN3-217ENST00000565354 SPANXN3Q5MJ09 141 aa16.92■□□□□ 0.3
CLN3-217ENST00000565354 RNF187Q5TA31 235 aaPredicted RBP16.92■□□□□ 0.3
CLN3-217ENST00000565354 KIAA1614Q5VZ46 1190 aa16.92■□□□□ 0.3
CLN3-217ENST00000565354 NEPROQ6NW34 567 aa16.92■□□□□ 0.3
CLN3-217ENST00000565354 OGFOD3Q6PK18 319 aa16.92■□□□□ 0.3
CLN3-217ENST00000565354 PACS1Q6VY07 963 aa16.92■□□□□ 0.3
CLN3-217ENST00000565354 TMEM135Q86UB9 458 aa16.92■□□□□ 0.3
CLN3-217ENST00000565354 CLDN19Q8N6F1 224 aa16.92■□□□□ 0.3
CLN3-217ENST00000565354 NOA1Q8NC60 698 aaKnown RBP16.92■□□□□ 0.3
CLN3-217ENST00000565354 GPR156Q8NFN8 814 aa16.92■□□□□ 0.3
CLN3-217ENST00000565354 CALML6Q8TD86 181 aa16.92■□□□□ 0.3
CLN3-217ENST00000565354 SLC46A1Q96NT5 459 aa16.92■□□□□ 0.3
CLN3-217ENST00000565354 TSSK1BQ9BXA7 367 aa16.92■□□□□ 0.3
CLN3-217ENST00000565354 SYNDIG1Q9H7V2 258 aa16.92■□□□□ 0.3
CLN3-217ENST00000565354 MARCH4Q9P2E8 410 aaPredicted RBP16.92■□□□□ 0.3
CLN3-217ENST00000565354 TBC1D29Q9UFV1 150 aa16.92■□□□□ 0.3
CLN3-217ENST00000565354 ZC3H7BQ9UGR2 993 aaKnown RBP16.92■□□□□ 0.3
CLN3-217ENST00000565354 AHCTF1Q8WYP5 2266 aa16.91■□□□□ 0.3
CLN3-217ENST00000565354 A0A1W2PNU3 283 aaPredicted RBP16.91■□□□□ 0.3
CLN3-217ENST00000565354 EME2A4GXA9 379 aaPredicted RBP16.91■□□□□ 0.3
CLN3-217ENST00000565354 MGAT4DA6NG13 374 aa16.91■□□□□ 0.3
CLN3-217ENST00000565354 OR5K4A6NMS3 321 aa16.91■□□□□ 0.3
CLN3-217ENST00000565354 RHPN2P1A8MT19 583 aa16.91■□□□□ 0.3
CLN3-217ENST00000565354 ESPNB1AK53 854 aa16.91■□□□□ 0.3
CLN3-217ENST00000565354 NOBOXO60393 691 aa16.91■□□□□ 0.3
CLN3-217ENST00000565354 FTH1P02794 183 aa16.91■□□□□ 0.3
CLN3-217ENST00000565354 F3P13726 295 aa16.91■□□□□ 0.3
CLN3-217ENST00000565354 OGNP20774 298 aaKnown RBP16.91■□□□□ 0.3
CLN3-217ENST00000565354 RBMS1P29558 406 aaKnown RBP16.91■□□□□ 0.3
CLN3-217ENST00000565354 PPM1FP49593 454 aaPredicted RBP16.91■□□□□ 0.3
CLN3-217ENST00000565354 CSRP3P50461 194 aa16.91■□□□□ 0.3
CLN3-217ENST00000565354 NFE2L1Q14494 772 aa16.91■□□□□ 0.3
CLN3-217ENST00000565354 CRYMQ14894 314 aa16.91■□□□□ 0.3
CLN3-217ENST00000565354 GLE1Q53GS7 698 aaKnown RBP16.91■□□□□ 0.3
CLN3-217ENST00000565354 PTRHD1Q6GMV3 140 aaKnown RBP16.91■□□□□ 0.3
CLN3-217ENST00000565354 C11orf96Q7Z7L8 435 aa16.91■□□□□ 0.3
CLN3-217ENST00000565354 ANKMY2Q8IV38 441 aa16.91■□□□□ 0.3
CLN3-217ENST00000565354 TRIM48Q8IWZ4 208 aa16.91■□□□□ 0.3
CLN3-217ENST00000565354 NAGSQ8N159 534 aa16.91■□□□□ 0.3
CLN3-217ENST00000565354 AGGF1Q8N302 714 aaeCLIP16.91■□□□□ 0.3
CLN3-217ENST00000565354 OR2L2Q8NH16 312 aa16.91■□□□□ 0.3
CLN3-217ENST00000565354 HM13Q8TCT9 377 aa16.91■□□□□ 0.3
CLN3-217ENST00000565354 PATE1Q8WXA2 126 aa16.91■□□□□ 0.3
CLN3-217ENST00000565354 GRAMD1AQ96CP6 724 aa16.91■□□□□ 0.3
CLN3-217ENST00000565354 CCDC97Q96F63 343 aaPredicted RBP16.91■□□□□ 0.3
CLN3-217ENST00000565354 CCM2Q9BSQ5 444 aa16.91■□□□□ 0.3
CLN3-217ENST00000565354 FAM167BQ9BTA0 163 aa16.91■□□□□ 0.3
CLN3-217ENST00000565354 PPANQ9NQ55 473 aaKnown RBP16.91■□□□□ 0.3
CLN3-217ENST00000565354 PRDM8Q9NQV8 689 aa16.91■□□□□ 0.3
CLN3-217ENST00000565354 GRHL1Q9NZI5 618 aa16.91■□□□□ 0.3
CLN3-217ENST00000565354 IL1RAPL1Q9NZN1 696 aa16.91■□□□□ 0.3
CLN3-217ENST00000565354 FAM169AQ9Y6X4 670 aa16.91■□□□□ 0.3
CLN3-217ENST00000565354 DOPEY2Q9Y3R5 2298 aa16.9■□□□□ 0.3
CLN3-217ENST00000565354 FLNCQ14315 2725 aa16.9■□□□□ 0.3
CLN3-217ENST00000565354 ZCWPW2A0A1B0GU75 182 aa16.9■□□□□ 0.3
CLN3-217ENST00000565354 PRMT5O14744 637 aaPredicted RBP16.9■□□□□ 0.3
CLN3-217ENST00000565354 ZW10O43264 779 aa16.9■□□□□ 0.3
CLN3-217ENST00000565354 ZNF500O60304 480 aaPredicted RBP16.9■□□□□ 0.3
CLN3-217ENST00000565354 OR1I1O60431 355 aa16.9■□□□□ 0.3
CLN3-217ENST00000565354 GLB1P16278 677 aa16.9■□□□□ 0.3
CLN3-217ENST00000565354 ARNTP27540 789 aa16.9■□□□□ 0.3
CLN3-217ENST00000565354 RPL10P27635 214 aaKnown RBP16.9■□□□□ 0.3
CLN3-217ENST00000565354 ARCN1P48444 511 aaKnown RBP16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms