RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 STYXQ8WUJ0 223 aa14.52□□□□□ -0.09
CLN3-213ENST00000565047 HEXDCQ8WVB3 486 aa14.52□□□□□ -0.09
CLN3-213ENST00000565047 SLC45A3Q96JT2 553 aa14.52□□□□□ -0.09
CLN3-213ENST00000565047 TSGA10Q9BZW7 698 aa14.52□□□□□ -0.09
CLN3-213ENST00000565047 ZMYND15Q9H091 742 aa14.52□□□□□ -0.09
CLN3-213ENST00000565047 OR52A5Q9H2C5 316 aa14.52□□□□□ -0.09
CLN3-213ENST00000565047 KIR3DX1Q9H7L2 352 aa14.52□□□□□ -0.09
CLN3-213ENST00000565047 ETNK1Q9HBU6 452 aa14.52□□□□□ -0.09
CLN3-213ENST00000565047 SLC24A2Q9UI40 661 aa14.52□□□□□ -0.09
CLN3-213ENST00000565047 HELZ2Q9BYK8 2649 aaKnown RBP14.52□□□□□ -0.09
CLN3-213ENST00000565047 OR5K3A6NET4 321 aa14.51□□□□□ -0.09
CLN3-213ENST00000565047 ARHGAP6O43182 974 aa14.51□□□□□ -0.09
CLN3-213ENST00000565047 KRT86O43790 486 aa14.51□□□□□ -0.09
CLN3-213ENST00000565047 F8A1P23610 371 aa14.51□□□□□ -0.09
CLN3-213ENST00000565047 SEPHS1P49903 392 aa14.51□□□□□ -0.09
CLN3-213ENST00000565047 ABHD18Q0P651 414 aa14.51□□□□□ -0.09
CLN3-213ENST00000565047 DBN1Q16643 649 aa14.51□□□□□ -0.09
CLN3-213ENST00000565047 CACHD1Q5VU97 1274 aa14.51□□□□□ -0.09
CLN3-213ENST00000565047 CFAP206Q8IYR0 622 aa14.51□□□□□ -0.09
CLN3-213ENST00000565047 TAB3Q8N5C8 712 aaPredicted RBP14.51□□□□□ -0.09
CLN3-213ENST00000565047 CLDN19Q8N6F1 224 aa14.51□□□□□ -0.09
CLN3-213ENST00000565047 IL22RA1Q8N6P7 574 aa14.51□□□□□ -0.09
CLN3-213ENST00000565047 OR52K1Q8NGK4 314 aa14.51□□□□□ -0.09
CLN3-213ENST00000565047 HM13Q8TCT9 377 aa14.51□□□□□ -0.09
CLN3-213ENST00000565047 C1orf54Q8WWF1 131 aa14.51□□□□□ -0.09
CLN3-213ENST00000565047 C12orf66Q96MD2 445 aa14.51□□□□□ -0.09
CLN3-213ENST00000565047 OR6C1Q96RD1 312 aa14.51□□□□□ -0.09
CLN3-213ENST00000565047 IMP3Q9NV31 184 aaKnown RBP14.51□□□□□ -0.09
CLN3-213ENST00000565047 WDR70Q9NW82 654 aa14.51□□□□□ -0.09
CLN3-213ENST00000565047 COL6A6A6NMZ7 2263 aa14.51□□□□□ -0.09
CLN3-213ENST00000565047 ERI2A8K979 691 aaKnown RBP14.5□□□□□ -0.09
CLN3-213ENST00000565047 B8ZZF3 427 aa14.5□□□□□ -0.09
CLN3-213ENST00000565047 TIAF1O95411 115 aa14.5□□□□□ -0.09
CLN3-213ENST00000565047 POLBP06746 335 aa14.5□□□□□ -0.09
CLN3-213ENST00000565047 RALBP11234 206 aa14.5□□□□□ -0.09
CLN3-213ENST00000565047 PLA2G2AP14555 144 aa14.5□□□□□ -0.09
CLN3-213ENST00000565047 ETS1P14921 441 aa14.5□□□□□ -0.09
CLN3-213ENST00000565047 FOLR1P15328 257 aa14.5□□□□□ -0.09
CLN3-213ENST00000565047 PDHA2P29803 388 aa14.5□□□□□ -0.09
CLN3-213ENST00000565047 FOXN2P32314 431 aa14.5□□□□□ -0.09
CLN3-213ENST00000565047 STAT5AP42229 794 aa14.5□□□□□ -0.09
CLN3-213ENST00000565047 PPM1FP49593 454 aaPredicted RBP14.5□□□□□ -0.09
CLN3-213ENST00000565047 ACVR1Q04771 509 aa14.5□□□□□ -0.09
CLN3-213ENST00000565047 SEMA5AQ13591 1074 aa14.5□□□□□ -0.09
CLN3-213ENST00000565047 IRGCQ6NXR0 463 aa14.5□□□□□ -0.09
CLN3-213ENST00000565047 CERS6Q6ZMG9 384 aa14.5□□□□□ -0.09
CLN3-213ENST00000565047 LRRC8AQ8IWT6 810 aa14.5□□□□□ -0.09
CLN3-213ENST00000565047 UNC5BQ8IZJ1 945 aa14.5□□□□□ -0.09
CLN3-213ENST00000565047 DCUN1D1Q96GG9 259 aa14.5□□□□□ -0.09
CLN3-213ENST00000565047 NRTNQ99748 197 aa14.5□□□□□ -0.09
CLN3-213ENST00000565047 MAP3K3Q99759 626 aa14.5□□□□□ -0.09
CLN3-213ENST00000565047 CCM2Q9BSQ5 444 aa14.5□□□□□ -0.09
CLN3-213ENST00000565047 TLR10Q9BXR5 811 aa14.5□□□□□ -0.09
CLN3-213ENST00000565047 TWSG1Q9GZX9 223 aa14.5□□□□□ -0.09
CLN3-213ENST00000565047 COG4Q9H9E3 785 aa14.5□□□□□ -0.09
CLN3-213ENST00000565047 STARD5Q9NSY2 213 aa14.5□□□□□ -0.09
CLN3-213ENST00000565047 IL17BQ9UHF5 180 aa14.5□□□□□ -0.09
CLN3-213ENST00000565047 RIMKLBQ9ULI2 386 aa14.5□□□□□ -0.09
CLN3-213ENST00000565047 PRSS21Q9Y6M0 314 aa14.5□□□□□ -0.09
CLN3-213ENST00000565047 SPENQ96T58 3664 aaKnown RBP14.5□□□□□ -0.09
CLN3-213ENST00000565047 CCDC162PA2VCL2 907 aa14.49□□□□□ -0.09
CLN3-213ENST00000565047 OR51F1A6NGY5 319 aa14.49□□□□□ -0.09
CLN3-213ENST00000565047 NKX2-8O15522 239 aa14.49□□□□□ -0.09
CLN3-213ENST00000565047 RASSF9O75901 435 aa14.49□□□□□ -0.09
CLN3-213ENST00000565047 PTMAP06454 111 aaKnown RBP14.49□□□□□ -0.09
CLN3-213ENST00000565047 ZSCAN5DPP0CG00 497 aa14.49□□□□□ -0.09
CLN3-213ENST00000565047 FDFT1P37268 417 aa14.49□□□□□ -0.09
CLN3-213ENST00000565047 KPNA2P52292 529 aaKnown RBP14.49□□□□□ -0.09
CLN3-213ENST00000565047 CCZ1BP86790 482 aa14.49□□□□□ -0.09
CLN3-213ENST00000565047 CCZ1P86791 482 aaPredicted RBP14.49□□□□□ -0.09
CLN3-213ENST00000565047 CACNG1Q06432 222 aa14.49□□□□□ -0.09
CLN3-213ENST00000565047 FOXM1Q08050 763 aa14.49□□□□□ -0.09
CLN3-213ENST00000565047 CDH17Q12864 832 aa14.49□□□□□ -0.09
CLN3-213ENST00000565047 RPS6KA1Q15418 735 aa14.49□□□□□ -0.09
CLN3-213ENST00000565047 CCNG2Q16589 344 aa14.49□□□□□ -0.09
CLN3-213ENST00000565047 LARP7Q4G0J3 582 aaKnown RBP eCLIP14.49□□□□□ -0.09
CLN3-213ENST00000565047 CCDC38Q502W7 563 aa14.49□□□□□ -0.09
CLN3-213ENST00000565047 ZRANB3Q5FWF4 1079 aa14.49□□□□□ -0.09
CLN3-213ENST00000565047 DRICH1Q6PGQ1 229 aaPredicted RBP14.49□□□□□ -0.09
CLN3-213ENST00000565047 PACS1Q6VY07 963 aa14.49□□□□□ -0.09
CLN3-213ENST00000565047 LINC00523Q86TU6 105 aa14.49□□□□□ -0.09
CLN3-213ENST00000565047 KMT5CQ86Y97 462 aa14.49□□□□□ -0.09
CLN3-213ENST00000565047 D2HGDHQ8N465 521 aa14.49□□□□□ -0.09
CLN3-213ENST00000565047 ZSCAN1Q8NBB4 408 aa14.49□□□□□ -0.09
CLN3-213ENST00000565047 UBXN4Q92575 508 aa14.49□□□□□ -0.09
CLN3-213ENST00000565047 LRRC45Q96CN5 670 aa14.49□□□□□ -0.09
CLN3-213ENST00000565047 SGSM3Q96HU1 749 aa14.49□□□□□ -0.09
CLN3-213ENST00000565047 PPM1MQ96MI6 270 aa14.49□□□□□ -0.09
CLN3-213ENST00000565047 ZNF778Q96MU6 729 aa14.49□□□□□ -0.09
CLN3-213ENST00000565047 RANBP9Q96S59 729 aa14.49□□□□□ -0.09
CLN3-213ENST00000565047 CD180Q99467 661 aa14.49□□□□□ -0.09
CLN3-213ENST00000565047 TRIT1Q9H3H1 467 aaKnown RBP14.49□□□□□ -0.09
CLN3-213ENST00000565047 CASS4Q9NQ75 786 aa14.49□□□□□ -0.09
CLN3-213ENST00000565047 HRASLS2Q9NWW9 162 aa14.49□□□□□ -0.09
CLN3-213ENST00000565047 SLC2A6Q9UGQ3 507 aa14.49□□□□□ -0.09
CLN3-213ENST00000565047 CFAP99D6REC4 459 aa14.48□□□□□ -0.09
CLN3-213ENST00000565047 SPAG6O75602 509 aa14.48□□□□□ -0.09
CLN3-213ENST00000565047 AP2A2O94973 939 aa14.48□□□□□ -0.09
CLN3-213ENST00000565047 SLC35G4P0C7Q5 338 aa14.48□□□□□ -0.09
CLN3-213ENST00000565047 FAM87AP0C7U9 286 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms