RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 C16orf72Q14CZ0 275 aa13.11□□□□□ -0.31
CLK3-216ENST00000564468 RPE65Q16518 533 aa13.11□□□□□ -0.31
CLK3-216ENST00000564468 BROXQ5VW32 411 aa13.11□□□□□ -0.31
CLK3-216ENST00000564468 FAM83HQ6ZRV2 1179 aaPredicted RBP13.11□□□□□ -0.31
CLK3-216ENST00000564468 ZNF605Q86T29 641 aa13.11□□□□□ -0.31
CLK3-216ENST00000564468 JAMLQ86YT9 394 aa13.11□□□□□ -0.31
CLK3-216ENST00000564468 PIANPQ8IYJ0 282 aa13.11□□□□□ -0.31
CLK3-216ENST00000564468 KCNE4Q8WWG9 221 aa13.11□□□□□ -0.31
CLK3-216ENST00000564468 C12orf66Q96MD2 445 aa13.11□□□□□ -0.31
CLK3-216ENST00000564468 NAPGQ99747 312 aaPredicted RBP13.11□□□□□ -0.31
CLK3-216ENST00000564468 TSSK1BQ9BXA7 367 aa13.11□□□□□ -0.31
CLK3-216ENST00000564468 WWP1Q9H0M0 922 aa13.11□□□□□ -0.31
CLK3-216ENST00000564468 CHRAC1Q9NRG0 131 aa13.11□□□□□ -0.31
CLK3-216ENST00000564468 IMP3Q9NV31 184 aaKnown RBP13.11□□□□□ -0.31
CLK3-216ENST00000564468 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.11□□□□□ -0.31
CLK3-216ENST00000564468 PSMD13Q9UNM6 376 aa13.11□□□□□ -0.31
CLK3-216ENST00000564468 WDR37Q9Y2I8 494 aa13.11□□□□□ -0.31
CLK3-216ENST00000564468 PTPRQQ9UMZ3 2332 aa13.1□□□□□ -0.31
CLK3-216ENST00000564468 MAGEB16A2A368 324 aa13.1□□□□□ -0.31
CLK3-216ENST00000564468 CTAGE9A4FU28 777 aa13.1□□□□□ -0.31
CLK3-216ENST00000564468 OR51F1A6NGY5 319 aa13.1□□□□□ -0.31
CLK3-216ENST00000564468 USP27XA6NNY8 438 aa13.1□□□□□ -0.31
CLK3-216ENST00000564468 LIN7AO14910 233 aaPredicted RBP13.1□□□□□ -0.31
CLK3-216ENST00000564468 PFDN6O15212 129 aa13.1□□□□□ -0.31
CLK3-216ENST00000564468 ZNF185O15231 689 aa13.1□□□□□ -0.31
CLK3-216ENST00000564468 ATXN7O15265 892 aaPredicted RBP13.1□□□□□ -0.31
CLK3-216ENST00000564468 TOX3O15405 576 aaPredicted RBP13.1□□□□□ -0.31
CLK3-216ENST00000564468 POLBP06746 335 aa13.1□□□□□ -0.31
CLK3-216ENST00000564468 MLNP12872 115 aa13.1□□□□□ -0.31
CLK3-216ENST00000564468 PAMP19021 973 aa13.1□□□□□ -0.31
CLK3-216ENST00000564468 CD82P27701 267 aa13.1□□□□□ -0.31
CLK3-216ENST00000564468 PAFAH1B1P43034 410 aa13.1□□□□□ -0.31
CLK3-216ENST00000564468 TTPAP49638 278 aa13.1□□□□□ -0.31
CLK3-216ENST00000564468 MAPK10P53779 464 aa13.1□□□□□ -0.31
CLK3-216ENST00000564468 KCNJ11Q14654 390 aa13.1□□□□□ -0.31
CLK3-216ENST00000564468 PPP1R7Q15435 360 aa13.1□□□□□ -0.31
CLK3-216ENST00000564468 PAPD7Q5XG87 772 aaKnown RBP13.1□□□□□ -0.31
CLK3-216ENST00000564468 RCBTB1Q8NDN9 531 aa13.1□□□□□ -0.31
CLK3-216ENST00000564468 ZDHHC12Q96GR4 267 aa13.1□□□□□ -0.31
CLK3-216ENST00000564468 ZNF778Q96MU6 729 aa13.1□□□□□ -0.31
CLK3-216ENST00000564468 RUNDC3BQ96NL0 473 aa13.1□□□□□ -0.31
CLK3-216ENST00000564468 TAAR9Q96RI9 348 aa13.1□□□□□ -0.31
CLK3-216ENST00000564468 RAB33BQ9H082 229 aa13.1□□□□□ -0.31
CLK3-216ENST00000564468 XAB2Q9HCS7 855 aaKnown RBP13.1□□□□□ -0.31
CLK3-216ENST00000564468 CATSPERZQ9NTU4 200 aa13.1□□□□□ -0.31
CLK3-216ENST00000564468 SAMD15Q9P1V8 674 aa13.1□□□□□ -0.31
CLK3-216ENST00000564468 RNF14Q9UBS8 474 aa13.1□□□□□ -0.31
CLK3-216ENST00000564468 FAM8A1Q9UBU6 413 aa13.1□□□□□ -0.31
CLK3-216ENST00000564468 SLC2A6Q9UGQ3 507 aa13.1□□□□□ -0.31
CLK3-216ENST00000564468 ACSL6Q9UKU0 697 aa13.1□□□□□ -0.31
CLK3-216ENST00000564468 PYCARDQ9ULZ3 195 aa13.1□□□□□ -0.31
CLK3-216ENST00000564468 SAR1BQ9Y6B6 198 aa13.1□□□□□ -0.31
CLK3-216ENST00000564468 MN1Q10571 1320 aaPredicted RBP13.1□□□□□ -0.31
CLK3-216ENST00000564468 B4E171 279 aa13.09□□□□□ -0.31
CLK3-216ENST00000564468 C9P02748 559 aa13.09□□□□□ -0.31
CLK3-216ENST00000564468 PRSS56P0CW18 603 aa13.09□□□□□ -0.31
CLK3-216ENST00000564468 HGFP14210 728 aa13.09□□□□□ -0.31
CLK3-216ENST00000564468 TYRP1P17643 537 aa13.09□□□□□ -0.31
CLK3-216ENST00000564468 ITIH1P19827 911 aa13.09□□□□□ -0.31
CLK3-216ENST00000564468 MPSTP25325 297 aa13.09□□□□□ -0.31
CLK3-216ENST00000564468 MGAT1P26572 445 aa13.09□□□□□ -0.31
CLK3-216ENST00000564468 SLC5A2P31639 672 aa13.09□□□□□ -0.31
CLK3-216ENST00000564468 TSPAN7P41732 249 aa13.09□□□□□ -0.31
CLK3-216ENST00000564468 CD151P48509 253 aa13.09□□□□□ -0.31
CLK3-216ENST00000564468 UCNP55089 124 aa13.09□□□□□ -0.31
CLK3-216ENST00000564468 RAB15P59190 212 aa13.09□□□□□ -0.31
CLK3-216ENST00000564468 PLCL1Q15111 1095 aa13.09□□□□□ -0.31
CLK3-216ENST00000564468 SNAP47Q5SQN1 464 aa13.09□□□□□ -0.31
CLK3-216ENST00000564468 CAPRIN2Q6IMN6 1127 aaKnown RBP13.09□□□□□ -0.31
CLK3-216ENST00000564468 ARHGAP22Q7Z5H3 698 aa13.09□□□□□ -0.31
CLK3-216ENST00000564468 PCGF5Q86SE9 256 aa13.09□□□□□ -0.31
CLK3-216ENST00000564468 MPP5Q8N3R9 675 aa13.09□□□□□ -0.31
CLK3-216ENST00000564468 CLDN19Q8N6F1 224 aa13.09□□□□□ -0.31
CLK3-216ENST00000564468 MCUQ8NE86 351 aa13.09□□□□□ -0.31
CLK3-216ENST00000564468 INSM2Q96T92 566 aaPredicted RBP13.09□□□□□ -0.31
CLK3-216ENST00000564468 KIFC1Q9BW19 673 aa13.09□□□□□ -0.31
CLK3-216ENST00000564468 ASPSCR1Q9BZE9 553 aa13.09□□□□□ -0.31
CLK3-216ENST00000564468 COG4Q9H9E3 785 aa13.09□□□□□ -0.31
CLK3-216ENST00000564468 TREX1Q9NSU2 369 aa13.09□□□□□ -0.31
CLK3-216ENST00000564468 TMEM9Q9P0T7 183 aa13.09□□□□□ -0.31
CLK3-216ENST00000564468 EPHA6Q9UF33 1036 aa13.09□□□□□ -0.31
CLK3-216ENST00000564468 SOX13Q9UN79 622 aa13.09□□□□□ -0.31
CLK3-216ENST00000564468 NEU2Q9Y3R4 380 aa13.09□□□□□ -0.31
CLK3-216ENST00000564468 TCRBV7S3A2A0A539 114 aa13.08□□□□□ -0.32
CLK3-216ENST00000564468 SDR42E2A6NKP2 422 aa13.08□□□□□ -0.32
CLK3-216ENST00000564468 A8MU76 341 aa13.08□□□□□ -0.32
CLK3-216ENST00000564468 CD3EAPO15446 510 aaKnown RBP13.08□□□□□ -0.32
CLK3-216ENST00000564468 CAPN5O15484 640 aaPredicted RBP13.08□□□□□ -0.32
CLK3-216ENST00000564468 ANKRD34CP0C6C1 535 aa13.08□□□□□ -0.32
CLK3-216ENST00000564468 CAPZBP47756 277 aa13.08□□□□□ -0.32
CLK3-216ENST00000564468 TERF1P54274 439 aa13.08□□□□□ -0.32
CLK3-216ENST00000564468 CRADDP78560 199 aa13.08□□□□□ -0.32
CLK3-216ENST00000564468 MRNIPQ6NTE8 343 aa13.08□□□□□ -0.32
CLK3-216ENST00000564468 CASC4Q6P4E1 433 aa13.08□□□□□ -0.32
CLK3-216ENST00000564468 CYB5D1Q6P9G0 228 aa13.08□□□□□ -0.32
CLK3-216ENST00000564468 ZNF534Q76KX8 674 aa13.08□□□□□ -0.32
CLK3-216ENST00000564468 SDCCAG8Q86SQ7 713 aaPredicted RBP13.08□□□□□ -0.32
CLK3-216ENST00000564468 FAM129CQ86XR2 697 aa13.08□□□□□ -0.32
CLK3-216ENST00000564468 SPACA3Q8IXA5 215 aa13.08□□□□□ -0.32
CLK3-216ENST00000564468 PPIL6Q8IXY8 311 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms