RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 ABCA4P78363 2273 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 GTF3C1Q12789 2109 aa7.13□□□□□ -1.27
VPS4A-203ENST00000564399 SNRNP200O75643 2136 aaKnown RBP7.12□□□□□ -1.27
VPS4A-203ENST00000564399 A0A1W2PQJ5 194 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 GSAPA4D1B5 854 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 E7EQ34 232 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 MATN3O15232 486 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 ZNF749O43361 778 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 KCNJ13O60928 360 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 POP7O75817 140 aaKnown RBP7.12□□□□□ -1.27
VPS4A-203ENST00000564399 KLF7O75840 302 aaPredicted RBP7.12□□□□□ -1.27
VPS4A-203ENST00000564399 HLA-DQB2P05538 268 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 HBQ1P09105 142 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 RARAP10276 462 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 MTHFD1P11586 935 aaKnown RBP7.12□□□□□ -1.27
VPS4A-203ENST00000564399 BPIP17213 487 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 POLR2CP19387 275 aaPredicted RBP7.12□□□□□ -1.27
VPS4A-203ENST00000564399 HTR1EP28566 365 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 PBLDP30039 288 aaPredicted RBP7.12□□□□□ -1.27
VPS4A-203ENST00000564399 PCK1P35558 622 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 TSFMP43897 325 aaKnown RBP7.12□□□□□ -1.27
VPS4A-203ENST00000564399 KPNA2P52292 529 aaKnown RBP7.12□□□□□ -1.27
VPS4A-203ENST00000564399 KRT33BQ14525 404 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 IFI16Q16666 785 aaKnown RBP7.12□□□□□ -1.27
VPS4A-203ENST00000564399 DPCR1Q3MIW9 517 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 IRAK1BP1Q5VVH5 260 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 FAM180AQ6UWF9 173 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 B4GALNT4Q76KP1 1039 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 C11orf96Q7Z7L8 435 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 MRGPRGQ86SM5 289 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 GPR135Q8IZ08 494 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 CARFQ8N187 725 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 BRSK1Q8TDC3 778 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 PPP4R1Q8TF05 950 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 LRRN4Q8WUT4 740 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 CPLX3Q8WVH0 158 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 MAML1Q92585 1016 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 N4BP2L2Q92802 583 aaPredicted RBP7.12□□□□□ -1.27
VPS4A-203ENST00000564399 POM121Q96HA1 1249 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 C12orf66Q96MD2 445 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 C17orf62Q9BQA9 187 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 CLSTN2Q9H4D0 955 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 SYTL2Q9HCH5 934 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 PCDH18Q9HCL0 1135 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 C1GALT1Q9NS00 363 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 OLAHQ9NV23 265 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 NDOR1Q9UHB4 597 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 AMACRQ9UHK6 382 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 SLC24A2Q9UI40 661 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 NUP210LQ5VU65 1888 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 DCHS2Q6V1P9 2916 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 AKAP6Q13023 2319 aa7.12□□□□□ -1.27
VPS4A-203ENST00000564399 ACANP16112 2415 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 INTS1Q8N201 2190 aaKnown RBP7.11□□□□□ -1.27
VPS4A-203ENST00000564399 TRGV8A0A0C4DH27 118 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 OR2AG2A6NM03 316 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 MFSD11O43934 449 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 JRKO75564 520 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 CD63P08962 238 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 CBSLP0DN79 551 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 TCF4P15884 667 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 FERP16591 822 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 HLA-DPA1P20036 260 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 CCNCP24863 283 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 CBSP35520 551 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 SSR1P43307 286 aaKnown RBP7.11□□□□□ -1.27
VPS4A-203ENST00000564399 LMAN1P49257 510 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 SOX8P57073 446 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 KCNK10P57789 538 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 GALNT2Q10471 571 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 AIMP2Q13155 320 aaKnown RBP7.11□□□□□ -1.27
VPS4A-203ENST00000564399 MMRN1Q13201 1228 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 BECN1Q14457 450 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 NFE2L1Q14494 772 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 GSE1Q14687 1217 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 ZNF169Q14929 603 aaPredicted RBP7.11□□□□□ -1.27
VPS4A-203ENST00000564399 SLC9A5Q14940 896 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 KRT31Q15323 416 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 ATP13A5Q4VNC0 1218 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 C1orf189Q5VU69 101 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 AGAP7PQ5VUJ5 663 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 DUS1LQ6P1R4 473 aaKnown RBP7.11□□□□□ -1.27
VPS4A-203ENST00000564399 TMEM220Q6QAJ8 160 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 BNC2Q6ZN30 1099 aaPredicted RBP7.11□□□□□ -1.27
VPS4A-203ENST00000564399 FAM83HQ6ZRV2 1179 aaPredicted RBP7.11□□□□□ -1.27
VPS4A-203ENST00000564399 TMC3Q7Z5M5 1100 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 BCORP1Q8N888 145 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 CCNYQ8ND76 341 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 OR4E2Q8NGC2 313 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 OR2Y1Q8NGV0 311 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 COG1Q8WTW3 980 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 TEKT4Q8WW24 435 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 ZFPM2Q8WW38 1151 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 ITLN2Q8WWU7 325 aaPredicted RBP7.11□□□□□ -1.27
VPS4A-203ENST00000564399 RELTQ969Z4 430 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 PTERQ96BW5 349 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 MAGEB10Q96LZ2 347 aaPredicted RBP7.11□□□□□ -1.27
VPS4A-203ENST00000564399 AGAP4Q96P64 663 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 INSM2Q96T92 566 aaPredicted RBP7.11□□□□□ -1.27
VPS4A-203ENST00000564399 ZCCHC2Q9C0B9 1178 aaKnown RBP7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms