RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 PMLP29590 882 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 GMPRP36959 345 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 SLC19A1P41440 591 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 CDKN2DP55273 166 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 MGAT5Q09328 741 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 BOP1Q14137 746 aaKnown RBP9.59□□□□□ -0.87
CLK3-208ENST00000562626 FRG1Q14331 258 aaKnown RBP9.59□□□□□ -0.87
CLK3-208ENST00000562626 SUZ12Q15022 739 aaKnown RBP9.59□□□□□ -0.87
CLK3-208ENST00000562626 TRIP6Q15654 476 aaKnown RBP9.59□□□□□ -0.87
CLK3-208ENST00000562626 KBTBD12Q3ZCT8 623 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 C14orf28Q4W4Y0 310 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 AARS2Q5JTZ9 985 aaKnown RBP9.59□□□□□ -0.87
CLK3-208ENST00000562626 LYPLAL1Q5VWZ2 237 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 METRNLQ641Q3 311 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 IYDQ6PHW0 289 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 LVRNQ6Q4G3 990 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 C3orf62Q6ZUJ4 267 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 PIM3Q86V86 326 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 RELL1Q8IUW5 271 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 CCNJLQ8IV13 435 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 PALM2Q8IXS6 379 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 SFRP1Q8N474 314 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 ARL10Q8N8L6 244 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 UHMK1Q8TAS1 419 aaKnown RBP9.59□□□□□ -0.87
CLK3-208ENST00000562626 HM13Q8TCT9 377 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 FBF1Q8TES7 1133 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 HEXDCQ8WVB3 486 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 JPH3Q8WXH2 748 aaPredicted RBP9.59□□□□□ -0.87
CLK3-208ENST00000562626 ELMO1Q92556 727 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 ATXN7L3BQ96GX2 97 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 INSM2Q96T92 566 aaPredicted RBP9.59□□□□□ -0.87
CLK3-208ENST00000562626 TCF12Q99081 682 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 OLFM1Q99784 485 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 RTKNQ9BST9 563 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 FAM167BQ9BTA0 163 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 PPANQ9NQ55 473 aaKnown RBP9.59□□□□□ -0.87
CLK3-208ENST00000562626 TSR3Q9UJK0 312 aaKnown RBP9.59□□□□□ -0.87
CLK3-208ENST00000562626 RUVBL2Q9Y230 463 aaKnown RBP9.59□□□□□ -0.87
CLK3-208ENST00000562626 DNMT3AQ9Y6K1 912 aaPredicted RBP9.59□□□□□ -0.87
CLK3-208ENST00000562626 SPTBP11277 2137 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 CPED1A4D0V7 1026 aa9.58□□□□□ -0.88
CLK3-208ENST00000562626 EME2A4GXA9 379 aaPredicted RBP9.58□□□□□ -0.88
CLK3-208ENST00000562626 PDZK1P1A8MUH7 402 aa9.58□□□□□ -0.88
CLK3-208ENST00000562626 DKK1O94907 266 aa9.58□□□□□ -0.88
CLK3-208ENST00000562626 ACSL3O95573 720 aa9.58□□□□□ -0.88
CLK3-208ENST00000562626 TOP3BO95985 862 aaKnown RBP9.58□□□□□ -0.88
CLK3-208ENST00000562626 OR56A5P0C7T3 313 aa9.58□□□□□ -0.88
CLK3-208ENST00000562626 PKMP14618 531 aaKnown RBP9.58□□□□□ -0.88
CLK3-208ENST00000562626 KCNA4P22459 653 aa9.58□□□□□ -0.88
CLK3-208ENST00000562626 TNFRSF8P28908 595 aa9.58□□□□□ -0.88
CLK3-208ENST00000562626 CLCN7P51798 805 aa9.58□□□□□ -0.88
CLK3-208ENST00000562626 UBE2IP63279 158 aaKnown RBP9.58□□□□□ -0.88
CLK3-208ENST00000562626 GBX1Q14549 363 aa9.58□□□□□ -0.88
CLK3-208ENST00000562626 CCDC157Q569K6 752 aa9.58□□□□□ -0.88
CLK3-208ENST00000562626 AGAP9Q5VTM2 703 aa9.58□□□□□ -0.88
CLK3-208ENST00000562626 PTRHD1Q6GMV3 140 aaKnown RBP9.58□□□□□ -0.88
CLK3-208ENST00000562626 CAPRIN2Q6IMN6 1127 aaKnown RBP9.58□□□□□ -0.88
CLK3-208ENST00000562626 ABRAXAS1Q6UWZ7 409 aa9.58□□□□□ -0.88
CLK3-208ENST00000562626 EFL1Q7Z2Z2 1120 aaKnown RBP9.58□□□□□ -0.88
CLK3-208ENST00000562626 SDCCAG8Q86SQ7 713 aaPredicted RBP9.58□□□□□ -0.88
CLK3-208ENST00000562626 GLRX5Q86SX6 157 aa9.58□□□□□ -0.88
CLK3-208ENST00000562626 MARCH9Q86YJ5 346 aa9.58□□□□□ -0.88
CLK3-208ENST00000562626 SDR16C5Q8N3Y7 309 aa9.58□□□□□ -0.88
CLK3-208ENST00000562626 CCDC74AQ96AQ1 378 aa9.58□□□□□ -0.88
CLK3-208ENST00000562626 ZNF514Q96K75 400 aaPredicted RBP9.58□□□□□ -0.88
CLK3-208ENST00000562626 GPR21Q99679 349 aa9.58□□□□□ -0.88
CLK3-208ENST00000562626 AARSD1Q9BTE6 412 aaKnown RBP9.58□□□□□ -0.88
CLK3-208ENST00000562626 DUSP23Q9BVJ7 150 aa9.58□□□□□ -0.88
CLK3-208ENST00000562626 FAM129AQ9BZQ8 928 aa9.58□□□□□ -0.88
CLK3-208ENST00000562626 VPS37BQ9H9H4 285 aa9.58□□□□□ -0.88
CLK3-208ENST00000562626 SARS2Q9NP81 518 aaKnown RBP9.58□□□□□ -0.88
CLK3-208ENST00000562626 INTS10Q9NVR2 710 aaKnown RBP9.58□□□□□ -0.88
CLK3-208ENST00000562626 MTRF1LQ9UGC7 380 aaKnown RBP9.58□□□□□ -0.88
CLK3-208ENST00000562626 PADI4Q9UM07 663 aa9.58□□□□□ -0.88
CLK3-208ENST00000562626 FER1L5A0AVI2 2057 aa9.57□□□□□ -0.88
CLK3-208ENST00000562626 CCDC88CQ9P219 2028 aa9.57□□□□□ -0.88
CLK3-208ENST00000562626 C17orf113A0A1B0GUU1 675 aa9.57□□□□□ -0.88
CLK3-208ENST00000562626 A0A1W2PQM1 296 aa9.57□□□□□ -0.88
CLK3-208ENST00000562626 HMX2A2RU54 273 aa9.57□□□□□ -0.88
CLK3-208ENST00000562626 B4GAT1O43505 415 aa9.57□□□□□ -0.88
CLK3-208ENST00000562626 TNFSF14O43557 240 aa9.57□□□□□ -0.88
CLK3-208ENST00000562626 GPC4O75487 556 aa9.57□□□□□ -0.88
CLK3-208ENST00000562626 ESR1P03372 595 aa9.57□□□□□ -0.88
CLK3-208ENST00000562626 FTH1P19P0C7X4 201 aa9.57□□□□□ -0.88
CLK3-208ENST00000562626 TPBGLP0DKB5 382 aa9.57□□□□□ -0.88
CLK3-208ENST00000562626 ALPPL2P10696 532 aa9.57□□□□□ -0.88
CLK3-208ENST00000562626 CEACAM1P13688 526 aa9.57□□□□□ -0.88
CLK3-208ENST00000562626 CKMT2P17540 419 aa9.57□□□□□ -0.88
CLK3-208ENST00000562626 IDSP22304 550 aa9.57□□□□□ -0.88
CLK3-208ENST00000562626 ACP1P24666 158 aa9.57□□□□□ -0.88
CLK3-208ENST00000562626 ACADLP28330 430 aa9.57□□□□□ -0.88
CLK3-208ENST00000562626 ADARP55265 1226 aaKnown RBP9.57□□□□□ -0.88
CLK3-208ENST00000562626 SIM1P81133 766 aaPredicted RBP9.57□□□□□ -0.88
CLK3-208ENST00000562626 DAB2P98082 770 aa9.57□□□□□ -0.88
CLK3-208ENST00000562626 CFHR1Q03591 330 aa9.57□□□□□ -0.88
CLK3-208ENST00000562626 ZNF460Q14592 562 aa9.57□□□□□ -0.88
CLK3-208ENST00000562626 NR0B2Q15466 257 aa9.57□□□□□ -0.88
CLK3-208ENST00000562626 UAP1Q16222 522 aaPredicted RBP9.57□□□□□ -0.88
CLK3-208ENST00000562626 RPE65Q16518 533 aa9.57□□□□□ -0.88
CLK3-208ENST00000562626 INAVAQ3KP66 663 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms