RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 FASTKQ14296 549 aaKnown RBP7.39□□□□□ -1.23
VPS39-204ENST00000561818 ACOX1Q15067 660 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 OR4D1Q15615 310 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 DPY19L1Q2PZI1 675 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 KIF19Q2TAC6 998 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 ATP13A5Q4VNC0 1218 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 SLC9B1Q4ZJI4 515 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 PDCD4Q53EL6 469 aaKnown RBP7.39□□□□□ -1.23
VPS39-204ENST00000561818 CMPK2Q5EBM0 449 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 CACHD1Q5VU97 1274 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 LIPJQ5W064 366 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 ZNF776Q68DI1 518 aaPredicted RBP7.39□□□□□ -1.23
VPS39-204ENST00000561818 KIAA1161Q6NSJ0 714 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 GTF2H2CQ6P1K8 395 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 SBSNQ6UWP8 590 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 UNC5DQ6UXZ4 953 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 LIPIQ6XZB0 460 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 MSANTD1Q6ZTZ1 278 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 LARP4Q71RC2 724 aaKnown RBP eCLIP7.39□□□□□ -1.23
VPS39-204ENST00000561818 MAVSQ7Z434 540 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 TECPR1Q7Z6L1 1165 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 KBTBD6Q86V97 674 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 DDIASQ8IXT1 998 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 ULK2Q8IYT8 1036 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 GPR26Q8NDV2 337 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 TNIP2Q8NFZ5 429 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 PIP4K2CQ8TBX8 421 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 ASB11Q8WXH4 323 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 ASB12Q8WXK4 309 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 UBE2E3Q969T4 207 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 TUBGCP3Q96CW5 907 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 NUS1Q96E22 293 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 SGF29Q96ES7 293 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 CCDC138Q96M89 665 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 FAM161BQ96MY7 647 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 CCM2Q9BSQ5 444 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 CADM1Q9BY67 442 aaKnown RBP7.39□□□□□ -1.23
VPS39-204ENST00000561818 OSBPL6Q9BZF3 934 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 CD244Q9BZW8 370 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 PITHD1Q9GZP4 211 aaPredicted RBP7.39□□□□□ -1.23
VPS39-204ENST00000561818 PCBD2Q9H0N5 130 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 LINC00597Q9H2U6 94 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 SPAG4Q9NPE6 437 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 SDR39U1Q9NRG7 319 aaPredicted RBP7.39□□□□□ -1.23
VPS39-204ENST00000561818 ARL15Q9NXU5 204 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 ARMCX1Q9P291 453 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 STX18Q9P2W9 335 aaKnown RBP7.39□□□□□ -1.23
VPS39-204ENST00000561818 SUCOQ9UBS9 1254 aaKnown RBP7.39□□□□□ -1.23
VPS39-204ENST00000561818 SLCO3A1Q9UIG8 710 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 CLEC4EQ9ULY5 219 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 EIF3LQ9Y262 564 aaKnown RBP7.39□□□□□ -1.23
VPS39-204ENST00000561818 MTF2Q9Y483 593 aaPredicted RBP7.39□□□□□ -1.23
VPS39-204ENST00000561818 DNAJC15Q9Y5T4 150 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 TTC34A8MYJ7 566 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 ANKRD65E5RJM6 399 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 GFYI3L273 518 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 AREL1O15033 823 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 LZTS3O60299 673 aaPredicted RBP7.38□□□□□ -1.23
VPS39-204ENST00000561818 OR1I1O60431 355 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 PRMT3O60678 531 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 ULK1O75385 1050 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 RSL1D1O76021 490 aaKnown RBP7.38□□□□□ -1.23
VPS39-204ENST00000561818 CLDN9O95484 217 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 LAMP2P13473 410 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 DRD1P21728 446 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 KELP23276 732 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 GSTM2P28161 218 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 RPL3P39023 403 aaKnown RBP7.38□□□□□ -1.23
VPS39-204ENST00000561818 ARL1P40616 181 aaPredicted RBP7.38□□□□□ -1.23
VPS39-204ENST00000561818 HNF4AP41235 474 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 GPR1P46091 355 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 GSTM5P46439 218 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 NUDT2P50583 147 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 CLCN2P51788 898 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 CLNS1AP54105 237 aaKnown RBP7.38□□□□□ -1.23
VPS39-204ENST00000561818 MTTPP55157 894 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 SH3BP2P78314 561 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 EMX2Q04743 252 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 TBL3Q12788 808 aaKnown RBP7.38□□□□□ -1.23
VPS39-204ENST00000561818 TRAP1Q12931 704 aaKnown RBP7.38□□□□□ -1.23
VPS39-204ENST00000561818 CSTF3Q12996 717 aaKnown RBP7.38□□□□□ -1.23
VPS39-204ENST00000561818 PRKG2Q13237 762 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 CAMK2GQ13555 558 aaPredicted RBP7.38□□□□□ -1.23
VPS39-204ENST00000561818 LAPTM5Q13571 262 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 UBAP2LQ14157 1087 aaKnown RBP7.38□□□□□ -1.23
VPS39-204ENST00000561818 ZNF234Q14588 700 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 ARHGAP19Q14CB8 494 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 IMPG1Q17R60 797 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 SPRED3Q2MJR0 410 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 XKR7Q5GH72 579 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 PAGE2BQ5JRK9 111 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 C9orf64Q5T6V5 341 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 ZNF697Q5TEC3 545 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 CES4AQ5XG92 561 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 FBXW10Q5XX13 1052 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 ADAMTSL4Q6UY14 1074 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 UBE2R2Q712K3 238 aaPredicted RBP7.38□□□□□ -1.23
VPS39-204ENST00000561818 PARS2Q7L3T8 475 aaKnown RBP7.38□□□□□ -1.23
VPS39-204ENST00000561818 MILR1Q7Z6M3 343 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 RALGPS2Q86X27 583 aaPredicted RBP7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms