RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 GLIPR1L2Q4G1C9 344 aa3.86□□□□□ -1.79
VPS13C-208ENST00000559119 C2CD6Q53TS8 623 aa3.86□□□□□ -1.79
VPS13C-208ENST00000559119 LSMEM2Q8N112 164 aa3.86□□□□□ -1.79
VPS13C-208ENST00000559119 INTS9Q9NV88 658 aaKnown RBP3.86□□□□□ -1.79
VPS13C-208ENST00000559119 TDRD15B5MCY1 1934 aaKnown RBP3.85□□□□□ -1.79
VPS13C-208ENST00000559119 A8MU10 97 aa3.85□□□□□ -1.79
VPS13C-208ENST00000559119 HCRTR2O43614 444 aa3.85□□□□□ -1.79
VPS13C-208ENST00000559119 HIST1H2ABP04908 130 aa3.85□□□□□ -1.79
VPS13C-208ENST00000559119 UBL4AP11441 157 aa3.85□□□□□ -1.79
VPS13C-208ENST00000559119 SELLP14151 372 aa3.85□□□□□ -1.79
VPS13C-208ENST00000559119 HIST1H2ADP20671 130 aa3.85□□□□□ -1.79
VPS13C-208ENST00000559119 ICAM3P32942 547 aa3.85□□□□□ -1.79
VPS13C-208ENST00000559119 PIK3CAP42336 1068 aa3.85□□□□□ -1.79
VPS13C-208ENST00000559119 MAGEA11P43364 429 aa3.85□□□□□ -1.79
VPS13C-208ENST00000559119 NKX2-1P43699 371 aaPredicted RBP3.85□□□□□ -1.79
VPS13C-208ENST00000559119 LGALS3BPQ08380 585 aa3.85□□□□□ -1.79
VPS13C-208ENST00000559119 HIST3H2AQ7L7L0 130 aa3.85□□□□□ -1.79
VPS13C-208ENST00000559119 ZNF554Q86TJ5 538 aa3.85□□□□□ -1.79
VPS13C-208ENST00000559119 FBXL16Q8N461 479 aa3.85□□□□□ -1.79
VPS13C-208ENST00000559119 TMEM116Q8NCL8 245 aa3.85□□□□□ -1.79
VPS13C-208ENST00000559119 OR2T11Q8NH01 316 aa3.85□□□□□ -1.79
VPS13C-208ENST00000559119 OR2L2Q8NH16 312 aa3.85□□□□□ -1.79
VPS13C-208ENST00000559119 NUDCD1Q96RS6 583 aa3.85□□□□□ -1.79
VPS13C-208ENST00000559119 MYADMQ96S97 322 aa3.85□□□□□ -1.79
VPS13C-208ENST00000559119 PAIP1Q9H074 479 aaKnown RBP3.85□□□□□ -1.79
VPS13C-208ENST00000559119 TRMT1Q9NXH9 659 aaKnown RBP3.85□□□□□ -1.79
VPS13C-208ENST00000559119 RNF186Q9NXI6 227 aa3.85□□□□□ -1.79
VPS13C-208ENST00000559119 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.85□□□□□ -1.79
VPS13C-208ENST00000559119 KPNA7A9QM74 516 aa3.84□□□□□ -1.79
VPS13C-208ENST00000559119 ATP6V0E1O15342 81 aa3.84□□□□□ -1.79
VPS13C-208ENST00000559119 TGFB1I1O43294 461 aa3.84□□□□□ -1.79
VPS13C-208ENST00000559119 SPARCP09486 303 aa3.84□□□□□ -1.79
VPS13C-208ENST00000559119 HNF4AP41235 474 aa3.84□□□□□ -1.79
VPS13C-208ENST00000559119 PTGER3P43115 390 aa3.84□□□□□ -1.79
VPS13C-208ENST00000559119 MSH2P43246 934 aa3.84□□□□□ -1.79
VPS13C-208ENST00000559119 PRKAA1Q13131 559 aa3.84□□□□□ -1.79
VPS13C-208ENST00000559119 TAF13Q15543 124 aa3.84□□□□□ -1.79
VPS13C-208ENST00000559119 TAF1BQ53T94 588 aaPredicted RBP3.84□□□□□ -1.79
VPS13C-208ENST00000559119 CORO6Q6QEF8 472 aa3.84□□□□□ -1.79
VPS13C-208ENST00000559119 CEP97Q8IW35 865 aa3.84□□□□□ -1.79
VPS13C-208ENST00000559119 HACE1Q8IYU2 909 aa3.84□□□□□ -1.79
VPS13C-208ENST00000559119 LINC00612Q8N6U2 182 aa3.84□□□□□ -1.79
VPS13C-208ENST00000559119 METTL6Q8TCB7 284 aa3.84□□□□□ -1.79
VPS13C-208ENST00000559119 HPSE2Q8WWQ2 592 aa3.84□□□□□ -1.79
VPS13C-208ENST00000559119 LRRC61Q9BV99 259 aa3.84□□□□□ -1.79
VPS13C-208ENST00000559119 MBNL1Q9NR56 388 aaKnown RBP3.84□□□□□ -1.79
VPS13C-208ENST00000559119 SLC13A4Q9UKG4 626 aa3.84□□□□□ -1.79
VPS13C-208ENST00000559119 ARHGEF40Q8TER5 1519 aa3.84□□□□□ -1.8
VPS13C-208ENST00000559119 A0A1W2PQF6 199 aa3.83□□□□□ -1.8
VPS13C-208ENST00000559119 NPIPB15A6NHN6 443 aaPredicted RBP3.83□□□□□ -1.8
VPS13C-208ENST00000559119 NXPH2O95156 264 aa3.83□□□□□ -1.8
VPS13C-208ENST00000559119 UGT1A4P22310 534 aa3.83□□□□□ -1.8
VPS13C-208ENST00000559119 PBX3P40426 434 aa3.83□□□□□ -1.8
VPS13C-208ENST00000559119 GAGE2BQ13066 116 aa3.83□□□□□ -1.8
VPS13C-208ENST00000559119 BIRC3Q13489 604 aa3.83□□□□□ -1.8
VPS13C-208ENST00000559119 NECTIN1Q15223 517 aa3.83□□□□□ -1.8
VPS13C-208ENST00000559119 GAGE2EQ4V326 116 aa3.83□□□□□ -1.8
VPS13C-208ENST00000559119 DCAF10Q5QP82 559 aa3.83□□□□□ -1.8
VPS13C-208ENST00000559119 GAGE2AQ6NT46 116 aa3.83□□□□□ -1.8
VPS13C-208ENST00000559119 RSRC2Q7L4I2 434 aaKnown RBP3.83□□□□□ -1.8
VPS13C-208ENST00000559119 TSPAN33Q86UF1 283 aa3.83□□□□□ -1.8
VPS13C-208ENST00000559119 TRPC4APQ8TEL6 797 aa3.83□□□□□ -1.8
VPS13C-208ENST00000559119 FUCA2Q9BTY2 467 aa3.83□□□□□ -1.8
VPS13C-208ENST00000559119 UPF3AQ9H1J1 476 aaKnown RBP3.83□□□□□ -1.8
VPS13C-208ENST00000559119 SMC4Q9NTJ3 1288 aa3.83□□□□□ -1.8
VPS13C-208ENST00000559119 ERAP1Q9NZ08 941 aa3.83□□□□□ -1.8
VPS13C-208ENST00000559119 GAGE2DQ9UEU5 116 aa3.83□□□□□ -1.8
VPS13C-208ENST00000559119 TSPYL4Q9UJ04 414 aa3.83□□□□□ -1.8
VPS13C-208ENST00000559119 KLF11O14901 512 aa3.82□□□□□ -1.8
VPS13C-208ENST00000559119 GPC4O75487 556 aa3.82□□□□□ -1.8
VPS13C-208ENST00000559119 ACP2P11117 423 aa3.82□□□□□ -1.8
VPS13C-208ENST00000559119 MAPK9P45984 424 aa3.82□□□□□ -1.8
VPS13C-208ENST00000559119 GALCP54803 685 aa3.82□□□□□ -1.8
VPS13C-208ENST00000559119 ELAVL2Q12926 359 aaKnown RBP3.82□□□□□ -1.8
VPS13C-208ENST00000559119 DRP2Q13474 957 aa3.82□□□□□ -1.8
VPS13C-208ENST00000559119 IL27RAQ6UWB1 636 aa3.82□□□□□ -1.8
VPS13C-208ENST00000559119 GALNT13Q8IUC8 556 aa3.82□□□□□ -1.8
VPS13C-208ENST00000559119 KBTBD8Q8NFY9 601 aa3.82□□□□□ -1.8
VPS13C-208ENST00000559119 OR1J1Q8NGS3 322 aa3.82□□□□□ -1.8
VPS13C-208ENST00000559119 HSD17B8Q92506 261 aa3.82□□□□□ -1.8
VPS13C-208ENST00000559119 TRAF4Q9BUZ4 470 aaPredicted RBP3.82□□□□□ -1.8
VPS13C-208ENST00000559119 POLR1BQ9H9Y6 1135 aa3.82□□□□□ -1.8
VPS13C-208ENST00000559119 RRP7BPQ9NSQ0 103 aa3.82□□□□□ -1.8
VPS13C-208ENST00000559119 A0A1W2PRB8 838 aa3.81□□□□□ -1.8
VPS13C-208ENST00000559119 MED19A0JLT2 244 aaPredicted RBP3.81□□□□□ -1.8
VPS13C-208ENST00000559119 TMEM8BA6NDV4 472 aa3.81□□□□□ -1.8
VPS13C-208ENST00000559119 IFRD1O00458 451 aaPredicted RBP3.81□□□□□ -1.8
VPS13C-208ENST00000559119 PIGNO95427 931 aa3.81□□□□□ -1.8
VPS13C-208ENST00000559119 CAPN2P17655 700 aa3.81□□□□□ -1.8
VPS13C-208ENST00000559119 GPR143P51810 404 aa3.81□□□□□ -1.8
VPS13C-208ENST00000559119 KRTAP10-8P60410 259 aa3.81□□□□□ -1.8
VPS13C-208ENST00000559119 E2F5Q15329 346 aa3.81□□□□□ -1.8
VPS13C-208ENST00000559119 HLA-BQ31612 363 aa3.81□□□□□ -1.8
VPS13C-208ENST00000559119 WLSQ5T9L3 541 aa3.81□□□□□ -1.8
VPS13C-208ENST00000559119 ADALQ6DHV7 355 aa3.81□□□□□ -1.8
VPS13C-208ENST00000559119 ACAD10Q6JQN1 1059 aa3.81□□□□□ -1.8
VPS13C-208ENST00000559119 CYP20A1Q6UW02 462 aa3.81□□□□□ -1.8
VPS13C-208ENST00000559119 TMTC2Q8N394 836 aa3.81□□□□□ -1.8
VPS13C-208ENST00000559119 ESX1Q8N693 406 aa3.81□□□□□ -1.8
VPS13C-208ENST00000559119 DAZLQ92904 295 aaKnown RBP3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms