RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 PXDC1Q5TGL8 231 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 ZDHHC20Q5W0Z9 365 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 RHBDF2Q6PJF5 856 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 ERN2Q76MJ5 926 aaKnown RBP1.59□□□□□ -2.15
USP3-209ENST00000558925 DGLUCYQ7Z3D6 616 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 TMPRSS11BQ86T26 416 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 GPR180Q86V85 440 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 TMPRSS12Q86WS5 348 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 METTL23Q86XA0 190 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 CCDC170Q8IYT3 715 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 C1orf87Q8N0U7 546 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 SLC5A8Q8N695 610 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 GCSAMQ8N6F7 178 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 C1orf52Q8N6N3 182 aaKnown RBP1.59□□□□□ -2.15
USP3-209ENST00000558925 GPATCH11Q8N954 259 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 NAT8LQ8N9F0 302 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 IQUBQ8NA54 791 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 TSPAN14Q8NG11 270 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 OR5M8Q8NGP6 311 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 OR14A16Q8NHC5 309 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 BBS10Q8TAM1 723 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 WFIKKN2Q8TEU8 576 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 DEPDC1BQ8WUY9 529 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 CORO2AQ92828 525 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 SEMA4DQ92854 862 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 ST6GALNAC6Q969X2 333 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 OTUB1Q96FW1 271 aaPredicted RBP1.59□□□□□ -2.15
USP3-209ENST00000558925 VMP1Q96GC9 406 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 OXNAD1Q96HP4 312 aaPredicted RBP1.59□□□□□ -2.15
USP3-209ENST00000558925 FAM81BQ96LP2 452 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 SLC22A12Q96S37 553 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 CITED2Q99967 270 aaPredicted RBP1.59□□□□□ -2.15
USP3-209ENST00000558925 SLC25A33Q9BSK2 321 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 XAB2Q9HCS7 855 aaKnown RBP1.59□□□□□ -2.15
USP3-209ENST00000558925 RAB9BQ9NP90 201 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 OCIAD1Q9NX40 245 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 MCM9Q9NXL9 1143 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 NPAP1Q9NZP6 1156 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 RCC2Q9P258 522 aaKnown RBP1.59□□□□□ -2.15
USP3-209ENST00000558925 IL36RNQ9UBH0 155 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 UBA2Q9UBT2 640 aaPredicted RBP1.59□□□□□ -2.15
USP3-209ENST00000558925 DDX25Q9UHL0 483 aaKnown RBP1.59□□□□□ -2.15
USP3-209ENST00000558925 MYO6Q9UM54 1294 aa1.59□□□□□ -2.15
USP3-209ENST00000558925 ASTN2O75129 1339 aaPredicted RBP1.59□□□□□ -2.16
USP3-209ENST00000558925 PTPRCP08575 1304 aa1.59□□□□□ -2.16
USP3-209ENST00000558925 DOCK7Q96N67 2140 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 PRAG1Q86YV5 1406 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 IGLV5-52A0A0A0MRZ9 124 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 TEX13DA0A0J9YY54 714 aaPredicted RBP1.58□□□□□ -2.16
USP3-209ENST00000558925 A0A0U1RQJ8 604 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 A0A0U1RQK1 487 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 FAM170AA1A519 330 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 ZNF320A2RRD8 509 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 OR5K3A6NET4 321 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 OR6C75A6NL08 312 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 PI4K2BG5E9Z4 385 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 ST8SIA3O43173 380 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 SYNCRIPO60506 623 aaKnown RBP1.58□□□□□ -2.16
USP3-209ENST00000558925 KCNJ13O60928 360 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 LDB3O75112 727 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 MED24O75448 989 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 RFPL2O75678 378 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 GBAP04062 536 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 ZFYP08048 801 aaPredicted RBP1.58□□□□□ -2.16
USP3-209ENST00000558925 KRT19P08727 400 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 FAM58BPP0C7Q3 252 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 OR2T7P0C7T2 308 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 LINC00271P0C7V0 271 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 DANCRP0C864 163 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 VDRP11473 427 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 SRCP12931 536 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 HLA-DOBP13765 273 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 PDGFRAP16234 1089 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 ZNF12P17014 697 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 LBPP18428 481 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 POLR2CP19387 275 aaPredicted RBP1.58□□□□□ -2.16
USP3-209ENST00000558925 CD22P20273 847 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 CBLP22681 906 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 HOXC13P31276 330 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 CCKARP32238 428 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 PCGF2P35227 344 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 TMPOP42166 694 aaKnown RBP1.58□□□□□ -2.16
USP3-209ENST00000558925 NR4A2P43354 598 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 PSMC4P43686 418 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 FASLGP48023 281 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 BMXP51813 675 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 CAPZA1P52907 286 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 UBASH3AP57075 661 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 LINC00205P59089 165 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 PTENP60484 403 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 POLR2LP62875 67 aaKnown RBP1.58□□□□□ -2.16
USP3-209ENST00000558925 PLIN5Q00G26 463 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 PDE1BQ01064 536 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 ROR2Q01974 943 aaKnown RBP1.58□□□□□ -2.16
USP3-209ENST00000558925 RELQ04864 619 aaPredicted RBP1.58□□□□□ -2.16
USP3-209ENST00000558925 DMPKQ09013 629 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 ZNF155Q12901 538 aaPredicted RBP1.58□□□□□ -2.16
USP3-209ENST00000558925 HSPB3Q12988 150 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 PLA2G7Q13093 441 aa1.58□□□□□ -2.16
USP3-209ENST00000558925 PTK6Q13882 451 aa1.58□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms